Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2254 ATGACTAACAACATCACAACAACTCAAAGGGACCGCCGTATTCTCTCATTCCCGGCGGTTCAACCCTGCGAAGGCATATCTCCGGCAACCCTCCTCACTTCTCTATTATCACTCTCACAAACCATATGCAATTTCCAACCCCAATCTTTCACCACCCAACGAAGAAACGCCAGAGAAACCACACGCCAAATTGGCATCATTCTCATCTTCCTCCAAGAACGTGAGTTTCTCATCCCTGATTCTTTAGTCCTATCCTTCTCAGAACTCCACTTCACTCTACAAAAGATTCACTTCTTGCTACAAGATTGTTCCCTACAAGGTTCTCGTCTCTTGATTCTGACCAAGTCTCACACCGTCGCCTCTCATTTTCGATCACTCATTCGCACTGTGGCCACTGTTCTAGACGTGATTATGCCTTTGGAGAGGTTTCAAGTTTGCCATGAAGTGAAGGAGCTAGTTGAGTTGGTAGCCAAGCAAGCGAGAAAAGCAAAATTCGATGTCGACCCCAACGATGAGCGTGCTAGAAGAATGGTTCATTCTGTTCTTCACCAGTTCGAGAGAGGAATCGAACCGGATGTGAGTTCCATACGAGAAATTCTCGACTACCTTGAAATCAAGACATGGTTTGATTGTGACAACGAGATAAAATTCCTGGAACAAGAGATTGTCAAGTCTGAGAGCAGTGAATTTCACGAGCGAGAGGTTCCGATTCTGAGTAGCTTGGTGGGGTTGTTAAGCTACTGCAGGGGAGTGATATTTGAAACTCTGGAACTGGGTCAGAATCCATCAAACCCTGACCAATCTCAAGGTAGGTGCAGCACGGAGATGATAACAACAACATGTTGCGTGAATCCAGAGGATTTCCGGTGTCCAATTTCCCTTGAATTGATGACAGACCCGGTGACTGTCTCCACAGGACAAACCTACGACCGTTCCTCCATTCACAAATGGCTGAAAGCAGGGAACACTACTTGTCCCAAAACAGGGGAGAGCATAGCGAAAACAGAGTTAGTCCCCAATGTCACACTCAAGAGGCTAATCCAGAATTTCTGCTCGGATAACGGAATTTCGATTGCGAAATCGAGTAACCGGAGCCGGGATATGACGAAGACCGTCGCGGCGGGTAGTCCGGCCGCGGCGCACGCCGTGCAGTTTCTGACGTGGTTTCTCACTAACAGGCTCGTGTTTGGGACTACAGAGCAGAAGAACAAAGCTGCTTATGAAATTCGCGTGCTTGCGAGGTCCAGCATTTTCAACAGGGCGTGTTTGGTTGAAGTTGGAGCAGTGTCACCACTGCTTGAGCTTTTGAAAATAGAGGATGCTCATGCTATTGATAAATCCACACAAGAGAATGCAATTTCTGCTTTGTTGAAACTCACCAAGCACTCGAGTGGACCTGAAAGTGTAATGGAAAGTGGAGGTTTGAAACCGATTCTCTCGGTTCTCAAAAATGGGGTTACCCTCGAAGCAAGGCAAATTGCAGCTGCTACTGTGTTCTACCTTTCTTCAGTGAAGGAATACAGAAAATTGATTGGGGAAAACCCAGAAGCAATTCCAGCTTTGGTGGAATTGATTCAGGAAGGAACAACCTGCGGAAAAAAGAACGCGGTGGTTGCGATTTTTGGGCTACTCTTGCATCCTAGGAACCACCAGAAGGTGCTTGAAGCTGGTGCTGTTCCTGTTCTCCTTGATGTCTTGGCTTCTTCCGACAAGGAGGAACTCATCACTGAGTCTCTAGCTGTTCTTGCAGCTCTGGCTGACAATGTTGATGGAGCTCTTGCGGTGTTTCGAGCCAAGGCGTTACCGTTGATCACTATGATGCTGCAATCTGCGGCGACTTCTCGTGCGGGGAAGGAACATTCAGCTTCTGTGTTGCTGTCACTGTGTGTCAATGTTGGCGCGGAGGTTGTGGCGGTTCTTGTGAAGGATCGCACGGTGATGCCTTTGCTTTATTCGCTTCTTACTGATGGAACTTCACATGCTGCTAAGAAAGCAAGGTTCCTCATCAGGGTTCTGCAGGATTTCAATGAAACTACAACTTCTGGATTGAAAGGTTGCTCAGTTCCACGGGAACGATCCCTGCATCAAGTTTGGTGA 2097 0.4745 MTNNITTTQRDRRILSFPAVQPCEGISPATLLTSLLSLSQTICNFQPQSFTTQRRNARETTRQIGIILIFLQEREFLIPDSLVLSFSELHFTLQKIHFLLQDCSLQGSRLLILTKSHTVASHFRSLIRTVATVLDVIMPLERFQVCHEVKELVELVAKQARKAKFDVDPNDERARRMVHSVLHQFERGIEPDVSSIREILDYLEIKTWFDCDNEIKFLEQEIVKSESSEFHEREVPILSSLVGLLSYCRGVIFETLELGQNPSNPDQSQGRCSTEMITTTCCVNPEDFRCPISLELMTDPVTVSTGQTYDRSSIHKWLKAGNTTCPKTGESIAKTELVPNVTLKRLIQNFCSDNGISIAKSSNRSRDMTKTVAAGSPAAAHAVQFLTWFLTNRLVFGTTEQKNKAAYEIRVLARSSIFNRACLVEVGAVSPLLELLKIEDAHAIDKSTQENAISALLKLTKHSSGPESVMESGGLKPILSVLKNGVTLEARQIAAATVFYLSSVKEYRKLIGENPEAIPALVELIQEGTTCGKKNAVVAIFGLLLHPRNHQKVLEAGAVPVLLDVLASSDKEELITESLAVLAALADNVDGALAVFRAKALPLITMMLQSAATSRAGKEHSASVLLSLCVNVGAEVVAVLVKDRTVMPLLYSLLTDGTSHAAKKARFLIRVLQDFNETTTSGLKGCSVPRERSLHQVW* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2254 698 SMART arm_5 546 587 IPR000225 GO:0005515
Lja4g2254 698 SMART arm_5 462 503 IPR000225 GO:0005515
Lja4g2254 698 SMART arm_5 415 461 IPR000225 GO:0005515
Lja4g2254 698 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Lja4g2254 698 PANTHER U BOX DOMAIN-CONTAINING 9 682 - -
Lja4g2254 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 474 IPR000225 GO:0005515
Lja4g2254 698 Gene3D - 358 687 IPR011989 -
Lja4g2254 698 Pfam U-box domain 285 354 IPR003613 GO:0004842|GO:0016567
Lja4g2254 698 PANTHER OS07G0532750 PROTEIN 9 682 - -
Lja4g2254 698 SUPERFAMILY RING/U-box 284 357 - -
Lja4g2254 698 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Lja4g2254 698 CDD RING-Ubox_PUB 288 330 IPR045210 -
Lja4g2254 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 557 600 IPR000225 GO:0005515
Lja4g2254 698 SUPERFAMILY ARM repeat 396 672 IPR016024 -
Lja4g2254 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 357 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2254 Lja-Chr4 24770573 24773050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2254 6 698 U-box Gene Family AT1G60190 38.669 7.06e-164 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2254 - - gmx:100787869 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2254 4 24770573 24773050 Lja4g2254 4 24770573 24773050 ECH