Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2243 ATGCGCAGCATACCACTTGATTTGAAGCACTCATCATCATCTCAGCCTCCTTTCTCTGCATTTCAAACATTTCATGAAGCTAATGTTAGCAATGAGAATGAAGCATCACCATCACCACCATCATCATCATCGTCGTCTCTTATTGGAATTAGTCCACTTATTTTGCTGGTTATAACAGTTCTCTCAGTTATCTTTTTCATCTATGGCCTTATCCATTTGGTTCTGTGGTTTCTGATGAAAAGACCATCATCATCCTCTTCAATCCTCTACAATTCCAACAGATTCCAAGAGTCCACCACGAGAACCCGCGCTCTTCAAAGACAGCTTCAAAACCTCTTCCGCTTGCATGACTCAGGTCTAGACCAGGCTCTCATAGATTCTCTTCCACTTTTCCACTACCAAGATTTACTGGACTTGAAGGAACCCTTTGATTGTGCTGTGTGTCTCTTTGAATTCTCAGAGCACGACAAGCTGAGATTGCTTCCAATGTGCAGCCATGCCTTTCACATGGATTGCCTTGACACATGGCTTCTCTCAAACTCTACATGTCCTCTATGCAGAGCAACTGTGGAGAAGAGTCCAACATTGAATTATGATAACAACAGTAACTCTTTGGTTGTTTCAAATAAGGAAGAGAATGGTAATGGGTGTTCAGAATCTGAAGAGAAGCAAAAAATTATGAAGAGGGTGCTTTCTGTGAGGCTTGGAAAATTCAGAAATATTGGATTGGAGGGTGGAGAAGGAATAGAAAGTGGTGGTTGTAGTTTGGAATTGGATGAGAGGAGATGCTACTCCATGGGTTCATATCAATATGTGGTTGGTGATATGAATCTGCAAGTGGTGTTGTCTCAATCTGGTGAGGAAGGTGAAAATGAGAATGTGGAGGGAAAGAGGATAAGGAGCACCACCAAGGGTGAGAGCTTCTCTGTTTCTAAGATTTGGCTTTGGTCCAAGACGAGTAAATTTCATAGTTCTAATGCTGCTTTCCCTTGA 993 0.4199 MRSIPLDLKHSSSSQPPFSAFQTFHEANVSNENEASPSPPSSSSSSLIGISPLILLVITVLSVIFFIYGLIHLVLWFLMKRPSSSSSILYNSNRFQESTTRTRALQRQLQNLFRLHDSGLDQALIDSLPLFHYQDLLDLKEPFDCAVCLFEFSEHDKLRLLPMCSHAFHMDCLDTWLLSNSTCPLCRATVEKSPTLNYDNNSNSLVVSNKEENGNGCSESEEKQKIMKRVLSVRLGKFRNIGLEGGEGIESGGCSLELDERRCYSMGSYQYVVGDMNLQVVLSQSGEEGENENVEGKRIRSTTKGESFSVSKIWLWSKTSKFHSSNAAFP* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2243 330 SMART ring_2 145 186 IPR001841 -
Lja4g2243 330 CDD RING-H2_PA-TM-RING 144 187 - -
Lja4g2243 330 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 330 - -
Lja4g2243 330 SUPERFAMILY RING/U-box 124 195 - -
Lja4g2243 330 Pfam Ring finger domain 144 187 IPR001841 -
Lja4g2243 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 330 - -
Lja4g2243 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 195 IPR013083 -
Lja4g2243 330 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2243 Lja-Chr4 24631873 24632943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2243 69 327 C3H Transcription Factor Family AT2G18650 39.809 7.05e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2243 - - aprc:113846147 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2243 4 24631873 24632943 Lja4g2243 4 24631873 24632943 ECH