Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2242 ATGTGTGTAAACCCCATCTGGATAAGCTTCATTGTCATCTTTTTGTTCTTTCCAGTGACCTTCTCAGAGGATGAAGTGGTGAAGCGGGCACTGGTGAGATTCATGGACAAACTTGCACCAGGGAATTCACAAAGACATGCCAAGTACTGGGGTTGGAACCTTGCTTCAGATCCTTGCAGTGATAACTGGCATGGTGTGAGCTGCATAAGAGGGAAAGTTAACACCATATTTCTTGATGATTCCAGCTTGAATGGGACTCTAGACACCAGTTCTCTTTGCATGGCAAAGTCTCTTCAAAGCCTTAGCCTAAAGAGAAACAAGTTACATGGATTGATACCAGAGGATTTAGGAGCTTGCAAGTCTTTGACTCAATTGTATTTAAGTGACAACAGCTTCTCGGGTGATCTTCCCAATTCTCTTGAAGAATTAGGCAATTTGAAGAGGCTTCATGTTGCTAGAAACAACTTCTCTGGAGAGCTTTCTAATGTAATTCATCTCTCAGGGTTGATATCTTTTCTTGCTGAGAAAAACAAATTCACTGGGGAAATTCCTGATTTTAACTTCTCTAAGCTTTTGGAGTTTAATGTCTCCAACAACAATTTAGAGGGTTCAATTCCTGATGTCAGAGGGGAATTCTATGCAGAAAGCTTTTCTGGAAATCCCAATTTATGTGGAACACCACTTCCAAAGGCTTGCTCTCCTACTCCTCCTCCACACTCAGAGAAAGAAACAGAATCCTTTATTGATAAGTTGGGTGCTTATTCTGGTTATCTTGTTCTTGGTTTAATTGTCCTGTTTTCGTTAGGCTGCATTTTGGCAACGAAATTCAAGACCAAAGAAGAAGCATTGATTGTTGAAAAGAAGATGAGAAGAGAAAACTCTATTGAAACTAAGAGTGGCACTGAGACCAGATCCAAGAGTTCAATGTCATCCCTTGAAAATGGGATGAACATGTCATCATCGTCATCATCATCATCAACTCTTGTTGTTTTCTCACGCCCTGAGTTGAAGCGATTGCAACTTGAGGACTTGCTGAGAGCTCCTGCTGAATTGATTGGGAGAGGAAGACACGGAAGCCTCTTCAAGGTGATGCTAGACAATGGAGTGCTTTTGGCAGTCAAGAGGATCAATGACTGGGGGATTTCAAAACAAGATTTTGAGAGAAGGATGAATAAGATTGGTCAAGTGAAGCATCCATATGTAGTTCCACTTGTTGCATATTATTGCTCACCACAAGAGAAGCTATTGGTGTATGAATACATGGAGAATGGGAGTCTCTTCCAAATGCTTTTAGGATCTCCAAGTGGCCAATCTTTTGAGTGGGGAAGCAGACTTAAGATTGCTTCTAAAATAGCTGAGGCTTTGGCTCATATCCATGAGGAGCTTCATGGAAGTGGTATAGCTCATGGTAACTTAAAATCAAGTAACATTTTGTTTGGAAAGAATATGGATCCCTGCATAAGCGAATACGGTCTGATGGTGGTTGAAGATCAAGCTCAAAGTGAAATTTCTCACAGAAGAAGATTCAAAAACAAGAATCTAGCTACTTCTCATGCATATAGAACCTTCAAAGTTGATACATATGCCTATGGTGTGATCCTTCTGCAGCTTCTGACTGGAAAAATAGTCCAGAACAATGGGCTCAATCTTGCTGAATGGGTGAGTTCAGTGATCAGAGAGGAATGGACTGCAGAAGTTTTTGACAAGTCATTGATTTCACAAGGTGCTAGTGAAGAGAGGATGGTGAACTTGTTGCATGTAGCACTGCAATGTGTAAATTCTTCTCCAAATGATAGACCAAGCATGAGTGATGTTGCAGCAATGACAATTGCATTGAAAGAGGAAGAAGAAAGATCCACAATCTTCAACTCATGA 1875 0.408 MCVNPIWISFIVIFLFFPVTFSEDEVVKRALVRFMDKLAPGNSQRHAKYWGWNLASDPCSDNWHGVSCIRGKVNTIFLDDSSLNGTLDTSSLCMAKSLQSLSLKRNKLHGLIPEDLGACKSLTQLYLSDNSFSGDLPNSLEELGNLKRLHVARNNFSGELSNVIHLSGLISFLAEKNKFTGEIPDFNFSKLLEFNVSNNNLEGSIPDVRGEFYAESFSGNPNLCGTPLPKACSPTPPPHSEKETESFIDKLGAYSGYLVLGLIVLFSLGCILATKFKTKEEALIVEKKMRRENSIETKSGTETRSKSSMSSLENGMNMSSSSSSSSTLVVFSRPELKRLQLEDLLRAPAELIGRGRHGSLFKVMLDNGVLLAVKRINDWGISKQDFERRMNKIGQVKHPYVVPLVAYYCSPQEKLLVYEYMENGSLFQMLLGSPSGQSFEWGSRLKIASKIAEALAHIHEELHGSGIAHGNLKSSNILFGKNMDPCISEYGLMVVEDQAQSEISHRRRFKNKNLATSHAYRTFKVDTYAYGVILLQLLTGKIVQNNGLNLAEWVSSVIREEWTAEVFDKSLISQGASEERMVNLLHVALQCVNSSPNDRPSMSDVAAMTIALKEEEERSTIFNS* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2242 624 ProSiteProfiles Protein kinase domain profile. 346 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2242 624 Pfam Protein kinase domain 350 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2242 624 Gene3D Phosphorylase Kinase; domain 1 310 420 - -
Lja4g2242 624 MobiDBLite consensus disorder prediction 300 322 - -
Lja4g2242 624 Gene3D Transferase(Phosphotransferase) domain 1 421 623 - -
Lja4g2242 624 SUPERFAMILY L domain-like 55 228 - -
Lja4g2242 624 Gene3D Ribonuclease Inhibitor 169 235 IPR032675 -
Lja4g2242 624 PANTHER OS05G0588300 PROTEIN 3 622 - -
Lja4g2242 624 PANTHER LRR RECEPTOR-LIKE KINASE 3 622 - -
Lja4g2242 624 SUPERFAMILY Protein kinase-like (PK-like) 349 609 IPR011009 -
Lja4g2242 624 Gene3D Ribonuclease Inhibitor 25 168 IPR032675 -
Lja4g2242 624 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Lja4g2242 624 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Lja4g2242 624 MobiDBLite consensus disorder prediction 293 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2242 Lja-Chr4 24627395 24629839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2242 10 615 Receptor kinase-like Gene Family AT1G60630 34.380 3.77e-97 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja4g2242 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2242 - - gmx:100787974 717.998