Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2239 ATGGGAGTAAGAAGCTATTTGATGGAATCAGCTCCATTTGCAGCCATGGTGATTGTGGAGTTCCTCGATGTGGGATTAACCACATTGAGCAAAGCAGCCATGTCTAGAGGAATGAGCCACTTTGTCTTTGTTGTCTACTCCAATGCTCTTGCCACTTTGATCCTCCTCCCTTCCTCTTTCCTCATCAACAGAACAACAAGACCACCCCTTTCTTTCTCGCTTCTCAGCAAATTCTTCCTCCTTTCACTTGTTGGCATAACTGTGATGCAGAATTGTGTGTTCACTGGCGTAAACTACAGCTCTCCCACTCTTGGATCTGCTATGAGCAACTTGACTCCAGCAATCACTTTTGTGCTAGCCATCATCTTTAGTAAGCCAAATCAAAATTGTGGCACAGTGCTATCAATCTCAGGAGCATTACTTGTTACCCTTTACAAGGGCGCTCCCATTGGCAGCTTCAAAATTCAACTCACTCCGTTGGAAACGTTCCCATTTCTGTTGGCAGAAACCAGTAACTGGGTCATTGGGGGGCTCTTCTTTGCTGCTGCATCTTTATCTCTTGCGCTCTGGAATATTGCTCAGGCAGCAATTCTTAAAGGATATCCTGCTCAGTTGACTATAGTAGCTTTTTACTGCTTGTTTGGAACGGTCCAATGTGCAATACTTTCTCTGATTGCAGTCAGAGATACAAATGCCTGGATTATTACACCTGGCATTGAGCTCATCTCCATATTCTATTCAGCAATTTTCGGAAGTGTGGTGACATTTTCTGTACTGACGTGGTGTATAAATAGGAAAGGACCTGTATTTGTTGCCATGTTCAAGCCTGTGGGGATTGCCGTTGCTGCGTTTATGAGTTCTTTCTTCCTTGGTGATACACTGCATGTTGGCAGTGTCATTGGCGCAGTAGTGATCGCCATCGGATTTTACACAGTGCTGTGGGCACAATCCAAAGAGACAAATGTGAAAAGCCTCGAAGCTGATAGACTCTCATCCCCGTCACAGACAAGCCCTCTACTAGAATCTCCATGA 1032 0.4486 MGVRSYLMESAPFAAMVIVEFLDVGLTTLSKAAMSRGMSHFVFVVYSNALATLILLPSSFLINRTTRPPLSFSLLSKFFLLSLVGITVMQNCVFTGVNYSSPTLGSAMSNLTPAITFVLAIIFSKPNQNCGTVLSISGALLVTLYKGAPIGSFKIQLTPLETFPFLLAETSNWVIGGLFFAAASLSLALWNIAQAAILKGYPAQLTIVAFYCLFGTVQCAILSLIAVRDTNAWIITPGIELISIFYSAIFGSVVTFSVLTWCINRKGPVFVAMFKPVGIAVAAFMSSFFLGDTLHVGSVIGAVVIAIGFYTVLWAQSKETNVKSLEADRLSSPSQTSPLLESP* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2239 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 318 - -
Lja4g2239 343 PANTHER WAT1-RELATED PROTEIN 8 337 - -
Lja4g2239 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 146 - -
Lja4g2239 343 Pfam EamA-like transporter family 25 143 IPR000620 GO:0016020|GO:0016021
Lja4g2239 343 Pfam EamA-like transporter family 175 313 IPR000620 GO:0016020|GO:0016021
Lja4g2239 343 PANTHER WAT1-RELATED PROTEIN 8 337 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2239 Lja-Chr4 24612630 24614628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2239 4 340 Nodulin-like Gene Family AT5G40240 41.477 1.69e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2239 - - ccaj:109809148 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2239 4 24612630 24614628 Lja4g2239 4 24612630 24614628 ECH