Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2228 ATGAGAGCCTCTGAAGCCTCTAGCATCTCTGCCACCAAGAAAGAAGGAATTTTCATCTCCCACAAAGCTGGTATTGAAGACAACGGTGACGACAACAACAACAAGGTGCTGAAAATGAAGGAAAAGATAGACGAAGAGGGTTCCAACGGATCCAGTTCCAAGAATATTCTTGATTTTGAGAACCTCTCCAAAGATAATTTGGCTCGTGGATCAGAGGTGCAAGAACTTGATTTTTTCAACCTGGGAAAAAACGTGGTGGGTTCTTCGTCATCTAGCTGGGCTATTAACGCTAACAACAATGAAGGTAGAGATGAAAAGAATGAGGTAAAAACCTCGGAGTCCAAGAATTTCTCTTGCAATTTTTGCATGAGACAATTTTCTTCGGCACAAGCCTTAGGAGGGCATCAAAATGCCCACAAGCCTGAACGTGAACTTGCGAAGCGTAGACTAGAGCTTCACCAAGCTGGTGCTCTTTGTCAGCCTCATTTTCCTTATTACACTTATCCAAGTCTTCCAACACCACCTTATTATAGCTCCTATAACAATGCACTTGGTATTAGGAGAGATTCCATGATTCACAAGTCAACTTATCCTCACACCCCACCAGGTTTCAGGTTTGGTCAAGGGGCCACTTGGTCAGACATGTTAAACATTATGCAACTTCTAGATAATTTGTTGCGAAATGGGATAAAGGTATGA 699 0.4249 MRASEASSISATKKEGIFISHKAGIEDNGDDNNNKVLKMKEKIDEEGSNGSSSKNILDFENLSKDNLARGSEVQELDFFNLGKNVVGSSSSSWAINANNNEGRDEKNEVKTSESKNFSCNFCMRQFSSAQALGGHQNAHKPERELAKRRLELHQAGALCQPHFPYYTYPSLPTPPYYSSYNNALGIRRDSMIHKSTYPHTPPGFRFGQGATWSDMLNIMQLLDNLLRNGIKV* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2228 232 Gene3D Classic Zinc Finger 99 159 - -
Lja4g2228 232 PANTHER ZINC FINGER PROTEIN JAGGED 3 227 IPR045320 GO:0003700
Lja4g2228 232 SUPERFAMILY beta-beta-alpha zinc fingers 114 144 IPR036236 -
Lja4g2228 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
Lja4g2228 232 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Lja4g2228 232 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 3 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2228 Lja-Chr4 24499101 24501020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2228 107 220 C2H2 Transcription Factor Family AT5G10970 42.982 9.86e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2228 - - lja:Lj1g3v2534910.1 378.637