Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2222 ATGGATATCACGATTCCGAGTCGACAGTTATTCATCAACGGAGACTGGAAACCCTCCGCCCGCAACAAGCGGATTCCGATCATCAACCCCTCCACCCAACAAATCATCGGGGATATTCCGGCGGCTACTAAGGAAGATGTTGACCTCGCCGTCGCCGCCGCAAAAGCCGCCCTCTCCCGCAACAACGGCGCTGACTGGGCTGCTGCCTCCGGCGCTGTTCGGGCACGCTATCTTCGCGCTATTGCTGCCAAGGTTACTGAGAAAAAGCCTCAGCTAGCTAAATTTGAAGCTATTGATTCTGGGAAGCCGCTTGATGAAGCTGCTTGGGACATTGATGATGTTGCTGGTTGTTTTGAGTACTATGCTGATCTTGCTGAGAAATTGGATTCCAAGCAAAAGGCACCTGTATCTCTTCCCTTGGATAATTTCAAGAGTTATGTACTTAGGGAGCCTATTGGGGTTGTTGGATTGATTACTCCATGGAACTATCCTATGTTGATGGCTACATGGAAGGTTGCTCCTGCTCTTGCTGCTGGTTGTGCTGCGATATTGAAGCCGTCCGAGTTGGCATCCGTGACCTGTTTGGAGCTGGGGGAAATCTGCAAGGAAGTGGGCCTTCCTCCTGGTGTGCTAAATATTCTCACTGGATTAGGCCCTGAGGCTGGTGCTCCTTTGGCATCCCATCCCGATGTCGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGGAGCAAAGTTATGACAGCTGCAGCTCAGCTGGTCAAGCCTGTTTCACTAGAGCTTGGTGGGAAAAGCCCACTCATTGTTTTTGAGGATGTTGACCTTGATAAGGCTGCTGAATGGACTATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTACATGAAAGCATAGCCAAAGAATTTTTGGATAGAATTGTGAAATGGATCAAAAACATCAAAATTTCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGTCCTGTTGTCAGTGAAGGACAGTATGAAAAAATAATGAAATTTATCTCAAATGCTAAGAGTGAGGGTGCAACCATTTTGACTGGTGGCTCTCGCCCAGAGCATCTAAAGAAGGGATTATTTGTTGAACCAACTGTCATAACTGATGTGACTACTTCCATGCAAATTTGGAAAGAAGAAGTTTTTGGACCTGTTCTCTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTAATCTAGCAAATGACACTATCTATGGCTTAGGTGCTGCTGTAATATCCAATGATCTAGAAAGATGTGATCGTATTACTAAGGCTTTTAAGGCAGGAATTGTATGGGTCAACTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCATTAAACGCAGTGGCTTTGGCCGTGAATTAGGAGAATGGGGACTTGACAACTATTTGAGTGTGAAGCAAGTAACTCAGTATATCTCTGATGAACCGTGGGGCTGGTACCAGCCTCCTGCAAAGCTGTGA 1512 0.4676 MDITIPSRQLFINGDWKPSARNKRIPIINPSTQQIIGDIPAATKEDVDLAVAAAKAALSRNNGADWAAASGAVRARYLRAIAAKVTEKKPQLAKFEAIDSGKPLDEAAWDIDDVAGCFEYYADLAEKLDSKQKAPVSLPLDNFKSYVLREPIGVVGLITPWNYPMLMATWKVAPALAAGCAAILKPSELASVTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLASHPDVDKIAFTGSSATGSKVMTAAAQLVKPVSLELGGKSPLIVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHESIAKEFLDRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKIMKFISNAKSEGATILTGGSRPEHLKKGLFVEPTVITDVTTSMQIWKEEVFGPVLCVKTFSTEEEAINLANDTIYGLGAAVISNDLERCDRITKAFKAGIVWVNCSQPCFTQAPWGGIKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYQPPAKL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2222 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Lja4g2222 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Lja4g2222 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Lja4g2222 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Lja4g2222 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 503 - -
Lja4g2222 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Lja4g2222 503 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Lja4g2222 503 CDD ALDH_F10_BADH 27 487 - -
Lja4g2222 503 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 1 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2222 Lja-Chr4 24351911 24356434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2222 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 77.932 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2222 K00130 - gmx:100170731 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2222 4 24351911 24356434 Lja4g2222 4 24351911 24356434 ECH