Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2221 ATGGCCGCCGCAGCACCGCCGTCAGATCCCGCCGCCGCATCTTCCAAGCACCACACCTACAATCGCAAGCAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGAGACAATATCCACTTGATCGGTCTCGACGACGCCGCTTCCAGATTAGGGGTTGAGAGAAGACGGATCTACGATATAGTCAACGTTTTGGAGAGCATTGGAGTTCTCTCAAGAAAAGCCAAGAATCAATACACCTGGAAAGGCTTTCGCGCAATTCCCCTCGCTTTGCAGGAGCTCAAGGATGAGGGTTTAAGGGAGAAATCTAGTGACTTTGATGGTGGTAATGACTCTGGAAAAGTGTCAGATGATGAGGATGACGAGGAAGGATTTGGGAACCCCAGTACTGGAAGTCAGAATGAGAAGTCGATGTCCAATTCCACTCTTCCCAGATCTATGAAAAATGATAACCGAAGGGAAAAGTCTCTGGCCCTGCTCACTCAGAATTTTGTGAAGCTCTTCCTCTGCTCCAACGTGGAAATGATCTCCCTTGATGATGCGGCGAAATTGCTTCTTGGGGATGCCCATAATACATCAATAATGAGAACGAAAGTTAGGCGCCTATATGATATTGCAAATGTGCTATCTTCCATGAGCCTTATTGAGAAGACACATACAAAGGACACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAAAGGGAGGACAGGGAATGAATCAGTTAGCACTTCAAATCTCAACGAGTCTAGGAAAAGGGCATTTGGAACTGATGTCACAAACATCAGCTTTGCTAGGAATAGAACAGATTTATTCATGAATGGAGACTTCGGCCAGAACTCTAAGAAGCAAAAAATTCTGGAAAATGATGGTGTCCTTAGTCAGGCAGATAAAAGCAATTTACAACAAGACACCAAACAGACTTATCAGTTTGGTCCTTTCGCTCCAGCCTACGTATCCAAAGCTGGAAACTCTGAGAACAGTAATGTGAAGCAAGTGCATGACTGGGAGAGTCTGGCAACTGCACACTGCCCTCGGTATCAAAACCAAGCTTTAAAAGAACTTTTCTCCCATTACATGGAAGCATGGAGATCGTGGTACTCTGAAGTTGCTGGGAAGAGATCAATACAAACTTTGTAG 1152 0.4523 MAAAAPPSDPAAASSKHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEGFGNPSTGSQNEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISLDDAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVSTSNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQDTKQTYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALKELFSHYMEAWRSWYSEVAGKRSIQTL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2221 383 Gene3D - 17 89 IPR036388 -
Lja4g2221 383 Gene3D - 151 238 IPR036388 -
Lja4g2221 383 Pfam E2F/DP family winged-helix DNA-binding domain 158 236 IPR003316 GO:0005667|GO:0006355
Lja4g2221 383 Pfam E2F/DP family winged-helix DNA-binding domain 23 87 IPR003316 GO:0005667|GO:0006355
Lja4g2221 383 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 14 374 - -
Lja4g2221 383 MobiDBLite consensus disorder prediction 104 155 - -
Lja4g2221 383 PANTHER TRANSCRIPTION FACTOR E2F 14 374 IPR015633 GO:0000978|GO:0006357
Lja4g2221 383 SMART E2F_TDP_2 22 87 IPR003316 GO:0005667|GO:0006355
Lja4g2221 383 SMART E2F_TDP_2 156 236 IPR003316 GO:0005667|GO:0006355
Lja4g2221 383 MobiDBLite consensus disorder prediction 130 150 - -
Lja4g2221 383 SUPERFAMILY "Winged helix" DNA-binding domain 21 85 IPR036390 -
Lja4g2221 383 SUPERFAMILY "Winged helix" DNA-binding domain 158 237 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2221 Lja-Chr4 24317764 24321276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2221 17 375 E2F-DP Transcription Factor Family AT3G48160 56.948 2.56e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lja4g2221 E2F_TDP 4.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2221 K09391 - gmx:100795252 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2221 4 24317764 24321276 Lja4g2221 4 24317764 24321276 ECH
Lja4g2221 4 24317764 24321276 Lja1g5624 1 98547957 98552287 PCT