Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2219 ATGGGTGCTACTGCCACCGGCGAAGTTTTCCGGCGAGTGTTGGAGGATTCCGATGAGCTGCACGTGCTGGCTGTTGATGACAGCCTTGTTGATCGTAAGGTCATTGAGCGTTTGCTGAAGATTTCTTCTTGCAAAGTGACGGTGGTGGATAGTGGAACACGTGCTCTTCAGTATTTGGGGTTGGATGGAGAAGAGAACAGTTCTATTGGATTTGATGGTGTGAAGGTTAATCTCATAATGACGGATTATTCCATGCCTGGGATGACAGGGTATGAATTGCTCAAGAAAATCAAGCAGGAGTCTTCTGCTTTTAGAGAGATTCCAGTGGTGGTCATGTCATCAGAGAATATCTTGACTCGAATTGATAGGTGCTTGGAGGAAGGAGCAGAGGATTTTCTGTTAAAGCCCGTCAAGTTATCAGATGTGAGACGCTTAAGAGATTTCATAATGAGCGGTGAAGTGAAGAAAGGGGAGAAAAGATCTCACAAAAGGAATCGATCTGATGATTGCAGTAGTTGCAGGCCATCTCTATCAAACACATTCTCACCAATGTCAAATCCATGTGATCCATCATCATCACTAGTCTCTCCACTATCACCTTCCACTTTATGCTCAAAGAAGTCTAGATTGTAA 633 0.4408 MGATATGEVFRRVLEDSDELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVKVNLIMTDYSMPGMTGYELLKKIKQESSAFREIPVVVMSSENILTRIDRCLEEGAEDFLLKPVKLSDVRRLRDFIMSGEVKKGEKRSHKRNRSDDCSSCRPSLSNTFSPMSNPCDPSSSLVSPLSPSTLCSKKSRL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2219 210 Gene3D - 20 173 - -
Lja4g2219 210 SMART REC_2 20 146 IPR001789 GO:0000160
Lja4g2219 210 Pfam Response regulator receiver domain 22 143 IPR001789 GO:0000160
Lja4g2219 210 MobiDBLite consensus disorder prediction 156 170 - -
Lja4g2219 210 ProSiteProfiles Response regulatory domain profile. 21 150 IPR001789 GO:0000160
Lja4g2219 210 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 210 IPR045279 GO:0009736
Lja4g2219 210 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 16 210 - -
Lja4g2219 210 MobiDBLite consensus disorder prediction 156 210 - -
Lja4g2219 210 MobiDBLite consensus disorder prediction 171 210 - -
Lja4g2219 210 SUPERFAMILY CheY-like 19 146 IPR011006 -
Lja4g2219 210 CDD REC_typeA_ARR 22 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2219 Lja-Chr4 24295223 24297695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2219 20 164 Response Regulator Gene Family AT3G48100 80.690 2.11e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja4g2219 Response_reg 5.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2219 K14492 - gmx:100527518 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5618 1 98411750 98414432 Lja4g2219 4 24295223 24297695 ECH
Lja4g2219 4 24295223 24297695 Lja4g2219 4 24295223 24297695 ECH