Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2212 ATGATGAATCGTTCCTCCGCCGCCGATGACTCCGCCGTCTCCGGCGAGATCATGCTGTTCGGAGTCAGGGTCGTGGTTGATTCGATGAGGAAGAGTGTCAGTATGAACAATCTCTCACAGTACGAGCTTCCTCAAGACGCCAACAATAACAACAACAGCAACAACAAAGACGTTATCGCCGCCGATTACGCCTCCGCCGACAACGCCGCTCCTCCCAGCTCCGGTAAGCAGCGCGACCGCGAGCGCAAGCGAGGGGTACCGTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTGGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGGGGAATCTCAAGGAACTACGTCAAAACGCGAACTCCAACGCAGGTTGCTAGTCATGCTCAGAAGTACTTTCTCCGGCGAAGTAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGACACGGTCTCTGCAATTCAAGTGGAGGAAGAACAGGTCCAGAATCAAGATACCATGTTTCATTCACAGCCCATGTGCCCTGAAACTAGCAAAATCAGTGGATTTCCTATGATGCCGCCGGTATATCAGTTCGGTGTTAATGAGAGTCCAATGGAAGAACTCTCTCTGGGACAAGGAAACATGAAACCCAATGTGCCAACCAATCTATTCCATCCAATTCCTGTTGCCCCAGATCATAAATCTCCCGCCATGTCTGATATCACATCCAGTTCGAGTTCCGCTGTTGAGCCGCCAACACTCTCCCTCGGGCTATCCTTCTCATCTGATCAGAGGCAGACATCATCAAGACATCCAGCTTTACATTCAATGCCGCGTTTCAACAACGGAGATAGCATCATAAGTGTTGCTTGA 867 0.511 MMNRSSAADDSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPQDANNNNNSNNKDVIAADYASADNAAPPSSGKQRDRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIQVEEEQVQNQDTMFHSQPMCPETSKISGFPMMPPVYQFGVNESPMEELSLGQGNMKPNVPTNLFHPIPVAPDHKSPAMSDITSSSSSAVEPPTLSLGLSFSSDQRQTSSRHPALHSMPRFNNGDSIISVA* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2212 288 PANTHER KIN2 14 288 - -
Lja4g2212 288 CDD SANT 87 132 IPR001005 -
Lja4g2212 288 SMART sant 84 134 IPR001005 -
Lja4g2212 288 MobiDBLite consensus disorder prediction 235 288 - -
Lja4g2212 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Lja4g2212 288 MobiDBLite consensus disorder prediction 63 87 - -
Lja4g2212 288 SUPERFAMILY Homeodomain-like 82 137 IPR009057 -
Lja4g2212 288 Pfam Myb-like DNA-binding domain 87 132 IPR001005 -
Lja4g2212 288 Gene3D - 86 138 - -
Lja4g2212 288 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 14 288 - -
Lja4g2212 288 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 83 134 IPR006447 GO:0003677
Lja4g2212 288 ProSiteProfiles SANT domain profile. 83 136 IPR017884 -
Lja4g2212 288 MobiDBLite consensus disorder prediction 228 288 - -
Lja4g2212 288 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2212 Lja-Chr4 24155579 24158053 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja4g2212 Myb_DNA-binding 7.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2212 - - gmx:780536 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5614 1 98380567 98382843 Lja4g2212 4 24155579 24158053 ECH
Lja4g2212 4 24155579 24158053 Lja4g2212 4 24155579 24158053 ECH
Lja4g2212 4 24155579 24158053 Lja1g5614 1 98380567 98382843 PCT