Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2210 ATGGCTTCTAAACACCTCACCAGTCTCACCATCCCTTCATCCTCTTCCTCTTCCTCCTTCTCCGCCGTCAACCCATCTCCGTCCACCGCCGCCATCATCCAAAGCAGGTCCCACTCCTTCGTCGGCCCCTCCCCGCGCTTCGCCCCCGCCTCCAACTCCGACATCTTCACCATCGACGAACTCGATCTCCACAGCACCAGCAGTGACGATGAAGAAGAACAATTAATCCCCGAAAAAGTCAAATTCGGCCCCTCCAATTTCCAGATTCTCAGAGTCGTCGGACAAGGTTCCTTCGGGAAGGTCTTCCTCGTCAGGAAGAAAAACGGCAACGGCGACTCCTCCGGTGACTCCTCCGGCGACGGTGACGGCGTGTTTGCAATGAAGGTCATGAGGAAAGACACCATTATAAAAAAGAATCACGTTGATTACATGAAAGCTGAGAGAGACATTCTCACGAAGCTTATTCATCCTTTCATTGTTCAGCTTCGCTACTCTTTCCAAACCAAATCGAAGTTGTATTTGATTTTGGACTTCATCAATGGTGGTCATCTCTTCTTTCACCTCTATCGTCAGAGGATTTTTAGTGAGGATCAGGCAAGGATTTACACTGCTGAGATTGTATCTGCTGTTTCACATCTTCATAGCAACGGCATCGTGCACCGGGATCTTAAGCCTGAAAATATACTTATGGATGCTGATGGGCATGTGATGCTAACTGATTTTGGGCTGTCTAAAGAAATTGACGAATCTGGAAGATCCAATTCTCTGTGTGGGACGACCGAATATATGGCTCCAGAAATCCTTCTGGGTAAAGGCCATAACAAGGATGCAGATTGGTGGAGTGTGGGTGTTCTGTTGTTTGAAATGCTATCTGGGAAGGCACCGTTTATACACACTAACAGGAAGAAGCTTCAGGAGAAAATTATTAAAGAGAAAGTCAAACTTCCACCATTCCTTACCACTGAAGCTCACTCTTTGCTCAAAGGATTGCTGCAAAAGGATCCAACTACAAGGTTAGGCAGTGGACCAAATGGAGAAGAGCAGATCAAAAGTCATAAATGGTTTCGGTCAATCAATTGGAAGAAATTGGAGGCAAGAGAACTGAAGCCAAAGTTCAAACCAGATGTGTCTGGAAAAGACTGCACAGCTAATTTTGACAAATGCTGGACAGCGATGCCTCTTGATGACTCACCTGCATCAACACCTACAGCAGGTGACCATTTCCAGGGCTATACTTATGAGGCACCAAACCCTTGGCTTTCTTCTGGATAA 1272 0.4662 MASKHLTSLTIPSSSSSSSFSAVNPSPSTAAIIQSRSHSFVGPSPRFAPASNSDIFTIDELDLHSTSSDDEEEQLIPEKVKFGPSNFQILRVVGQGSFGKVFLVRKKNGNGDSSGDSSGDGDGVFAMKVMRKDTIIKKNHVDYMKAERDILTKLIHPFIVQLRYSFQTKSKLYLILDFINGGHLFFHLYRQRIFSEDQARIYTAEIVSAVSHLHSNGIVHRDLKPENILMDADGHVMLTDFGLSKEIDESGRSNSLCGTTEYMAPEILLGKGHNKDADWWSVGVLLFEMLSGKAPFIHTNRKKLQEKIIKEKVKLPPFLTTEAHSLLKGLLQKDPTTRLGSGPNGEEQIKSHKWFRSINWKKLEARELKPKFKPDVSGKDCTANFDKCWTAMPLDDSPASTPTAGDHFQGYTYEAPNPWLSSG* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2210 423 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 422 - -
Lja4g2210 423 Pfam Protein kinase C terminal domain 376 413 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lja4g2210 423 CDD STKc_AGC 93 355 IPR045270 GO:0004674|GO:0005524
Lja4g2210 423 PANTHER RIBOSOMAL PROTEIN S6 KINASE 16 422 - -
Lja4g2210 423 Gene3D Phosphorylase Kinase; domain 1 86 398 - -
Lja4g2210 423 SMART pkinase_C_6 356 415 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja4g2210 423 MobiDBLite consensus disorder prediction 1 28 - -
Lja4g2210 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lja4g2210 423 ProSiteProfiles AGC-kinase C-terminal domain profile. 356 423 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja4g2210 423 ProSiteProfiles Protein kinase domain profile. 87 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2210 423 Gene3D Transferase(Phosphotransferase) domain 1 179 374 - -
Lja4g2210 423 Pfam Protein kinase domain 87 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2210 423 SMART serkin_6 87 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2210 423 SUPERFAMILY Protein kinase-like (PK-like) 73 399 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2210 Lja-Chr4 24122968 24126874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2210 11 416 AGC Kinase Gene Family AT3G08720 57.944 7.54e-178 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Lja4g2210 Pkinase 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2210 K04688 - gmx:100798259 660.988