Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2201 ATGATTTGCTCCTTTTGGACGTTTAAGGTGCTGAGACTTGGAATTAAAAGGGTGAGGGGGGTTTTATCCATACACAAACGGCTCAGAGAGGACGCAGCAGCAGGTTACAGCAATATAATGGCTTTGTTTGGTAGACTCGGGAACTTGCTTAAACATGCAGTGAATAGGCAAATAATTAGTTCAGAAATCCGTTCTCGTTTCCTGGCTACACGATCCATCAATAAAGCGGCATCTGCTCCTACCTCAATGCTCTTTGTAGGAGGCATTTCACCTACTACTACTGATCGTCATTTGGATGATGCCTTCTCAATACACGGTGATGTTTATTTAGCAACGGTAAAGCACACAAAAGTTGATGGTAAACCCAGACAATTTGGCCTTGTCGCGTTCACTACAGTTGAGTGCGCAACAAGGGCGCTTCAGGCGTTAAATGGTCAGGTCCTGCAGGGTAGACGACTCAGGATAAATTACACTAAAAATAGCCATTCATATATGGATGGTCATCATTATGATCCTCCATGTAGTTGCCATCTGTGTGAATTTTCTGACAATTTCACCCTTCCTACTGACGGTATAAGTAGTTACAGAAGCAAAATGAAGAAAGTGAATTATGGGTGCGGTGATGGTCTTGTCCTTCATCAAATTATTCACTCTTTCGGTGATGAAACTTCTCCTGGTTCCGTTGCTAGTCGTTTTGTAATTGCTGTAAAGGCCTCGGATAGTAGTAGTGGTGGTACAACATGTATTGGTAACAACTCAAATGGTGGACATGATGGAACTTGGGGGTTGGAACATGGGAGAGCATGA 807 0.4312 MICSFWTFKVLRLGIKRVRGVLSIHKRLREDAAAGYSNIMALFGRLGNLLKHAVNRQIISSEIRSRFLATRSINKAASAPTSMLFVGGISPTTTDRHLDDAFSIHGDVYLATVKHTKVDGKPRQFGLVAFTTVECATRALQALNGQVLQGRRLRINYTKNSHSYMDGHHYDPPCSCHLCEFSDNFTLPTDGISSYRSKMKKVNYGCGDGLVLHQIIHSFGDETSPGSVASRFVIAVKASDSSSGGTTCIGNNSNGGHDGTWGLEHGRA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2201 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 154 IPR000504 GO:0003723
Lja4g2201 268 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 40 241 - -
Lja4g2201 268 SUPERFAMILY RNA-binding domain, RBD 75 164 IPR035979 GO:0003676
Lja4g2201 268 SMART rrm1_1 83 156 IPR000504 GO:0003723
Lja4g2201 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 160 IPR000504 GO:0003723
Lja4g2201 268 CDD RRM_SF 84 156 - -
Lja4g2201 268 Gene3D - 60 173 IPR012677 -
Lja4g2201 268 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 40 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2201 Lja-Chr4 23735825 23737822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2201 81 158 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 3.85e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2201 K12741 - lja:Lj4g3v1597190.1 471.47