Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2199 ATGGAACCTCCCCTCTTCAACGACTCCACATTCTCCTCCGCCAACCCCTCCTTGTCTGAAATTTGGCCTCCGGACCCCGACCCCACCACCAGCTCCACCCTCCTTCCTCCGCGCCGGAAAAGAAACCTCCCTCCCTTCTCCTCCTCGAATGATAGTTGCGGCAATAAGCATGTGAAGTTGGGAGATTCCGTGGATGAGTTGAAAGGTGAGCCAGAGAAACAACCACCTTCTCCGCCGCCTCCGCCGCCGCCTAAGCAAGACTACATACACGTCAGAGCCAGAAGGGGACAAGCCACCGATAGTCACAGTCTCGCTGAGAGAGCCAGAAGAGAAAAGATCAGTGAGAGAATGAAAATTCTTCAAGATTTAGTCCCTGGATGCAACAAGGTGATTGGTAAAGCACTTGTACTGGATGAGATAATCAATTACATACAATCGCTGCAGCATCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCCAGATTCAACATGAACCCCACTATTGACTGTTTTTCTTCAAAAGATGTTGGTACTCAACCATTTGACCTTGCTGGAATAATATTTGGATCACAAGCATCCAGGGGTTATGCCCAGGGATCACAGCCTGGATGGCTGCATATGCAGATAACTGGTGGTTTTGAGAAAACAACATAA 663 0.4842 MEPPLFNDSTFSSANPSLSEIWPPDPDPTTSSTLLPPRRKRNLPPFSSSNDSCGNKHVKLGDSVDELKGEPEKQPPSPPPPPPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRFNMNPTIDCFSSKDVGTQPFDLAGIIFGSQASRGYAQGSQPGWLHMQITGGFEKTT* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2199 220 PANTHER BNAC05G07950D PROTEIN 68 220 - -
Lja4g2199 220 MobiDBLite consensus disorder prediction 73 87 - -
Lja4g2199 220 Pfam Helix-loop-helix DNA-binding domain 101 148 IPR011598 GO:0046983
Lja4g2199 220 MobiDBLite consensus disorder prediction 1 56 - -
Lja4g2199 220 MobiDBLite consensus disorder prediction 1 88 - -
Lja4g2199 220 Gene3D - 94 170 IPR036638 GO:0046983
Lja4g2199 220 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 220 IPR024097 GO:0006355
Lja4g2199 220 Coils Coil 144 164 - -
Lja4g2199 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 167 IPR036638 GO:0046983
Lja4g2199 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 147 IPR011598 GO:0046983
Lja4g2199 220 CDD bHLH_AtBPE_like 87 172 - -
Lja4g2199 220 SMART finulus 103 153 IPR011598 GO:0046983
Lja4g2199 220 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2199 Lja-Chr4 23724852 23729210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2199 81 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 68.571 4.17e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g2199 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2199 - - gmx:100799646 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2199 4 23724852 23729210 Lja4g2199 4 23724852 23729210 ECH