Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2195 ATGTCCGCCGGATCTCCTCCTCCGGTTCCCGCCGAACAATCCTCACCGTCGCCGGAACCGGAACCCAATCCACCGACCATCAGGAGGAGCAGCCGCCCCTCCCGCGCGTGCGCCATCCGCGCCGCTTCCCGCCTCTGTTCCGACCCGCCGGCGATCGAACGGAAGGAGGACTTGCCGCCGGCGAAATGCAGTAAGATCGTCACGCAGCTGGCGGAACCGCCCTCGTCGCCGTCGCAGCTGCCGCGGTGGAACCTGCGGTCTATGTGGGAGTTTGCTTCCGTGCTCAACTTCTTGCATCTGTTTAGGCCTCTGTTGAATATCTCACTGGAATTCTCAGCTGAAGAGTTTGAGACAGCTCTGCTTACCCCCAATGACACTTTGTTTCATATACACATGCCTTTGTTAAAGGCAATCCCTCCTGTTACACGAATGGCACTCACACGCGACACTTGGATAACCGTATTATGCAGGAAATTGAGAGATTGGTGGCATTGGGTTGCCGATGGGGATCTTCCAATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAATCACTTGATCCAGGAGTCCGTGTTGTCATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCCGAAGTTATATTGACAACTCAATCAAACATGGTGTTCAACTTTCAACATTCCGTAAAGAGCGTATTGGAGGTGATTCAAATGGAATTTCTTATTGGTATGAAGATGACCCCATGATTGGTCATAGGTTGTATCGAGAAATAAGGAAAACTGAAGTGGTTCAAATGAAGAAAGGGAAAGCAAGAGGTTCCCAGGTTCTTTCCAGTACATCATACCAGTGGGAAGCTGTTGCTACCAATTTTGATGAATTTCAAGATGTTTCTGAGAAGCTTTTCTCAAGTAAAAACAGAACAGAAGCTTTAGTGGGGAAAAAGCTGAAGATAGACATGCTTCCTGAAATTGAGAAAGCTCATAAGAAAAAGGAGAAGTTGCTGAAAAAGCAACAAAGAGAAGCTCTTCTTCTTGATAATTACTTGGTTATGGATGGGTTTGGTCCTGGGCGTTCACTTCGTGACAGGAAACGTGTTACCTACACTTTTGATGATTATGATCGCTCCATCAGTGAGGCAATCAAAGTAACAAAGCAGAAACAGCCATCCCCAGAACCTATGCGCCGGAGAGAATCAGTAGCAAAAACTGAAGCTTTGACAAATGGTAATCATGGTCCTTCACATGTTGCTGCTCAACATTTAAATTTTGGTATGCCATCTCCAGAATCACCTGACTTAGATGATGATGAGGAGGAAGATCATAAAACTGACGCATTGGGTGGAAGGCGGCGAAGACTGAGACCTAAGCGGTATTCAGAGAATGATTCCATTGAAGAAGGACCAGGTAATGAGGCAGGCTTTGACAGTGATGATGATATTGTTGGAGAGGTTGTGTATGATGAAGAATATCTTAAGAAACGTAAGCAGAGAAGGGATATTTCTAGTAGCTCTGAAGGAGATGAAGAAGATGAAGAAGAAGATCAAGGGGATGAATATAATCTTGAAGATGAAGAAGAAGACGATGATGATGACGATGACGACGACTTGAGCATCAGTGAGGATAGTGATAGTGACAAACCCCGCAAAGTTAAACAATTGCCAGGTCGTACTAGGAGGGAAACTAAACGGAGGTCTGTTGATGAGATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACTAGAAATACTATAAACTACCAACAATATGAACTGTCAGAATCAGAAACAGAGGTTACTAAACCTGAGAAGTCTGATGCATCCGGTGACCACTCAGATCCAAGTGAGAATGGGGAATATATGTCAGAAAGTGAAGGTTCTGGCAATGATGGTGAAGATCATGAAATGAAAGTAGATGAGCCTGTTACTTTTCCTGCAGTAGAAGAAGAGAATGAACTAAACCAGCCTGCTGCTGAGAAATTAAGTAGTCCAGGTCAGGAGGAAGCTGAGGGCATGGGAAAGAGACGTTTCCTTGATTTGAATGAGCTTGCCCCTAGCCCTGGTTTTGATGATGGTCCAATTCCAGATACCATAATGAAAGACGAAGACAATGATTACTGA 2112 0.4508 MSAGSPPPVPAEQSSPSPEPEPNPPTIRRSSRPSRACAIRAASRLCSDPPAIERKEDLPPAKCSKIVTQLAEPPSSPSQLPRWNLRSMWEFASVLNFLHLFRPLLNISLEFSAEEFETALLTPNDTLFHIHMPLLKAIPPVTRMALTRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQEDIRSYIDNSIKHGVQLSTFRKERIGGDSNGISYWYEDDPMIGHRLYREIRKTEVVQMKKGKARGSQVLSSTSYQWEAVATNFDEFQDVSEKLFSSKNRTEALVGKKLKIDMLPEIEKAHKKKEKLLKKQQREALLLDNYLVMDGFGPGRSLRDRKRVTYTFDDYDRSISEAIKVTKQKQPSPEPMRRRESVAKTEALTNGNHGPSHVAAQHLNFGMPSPESPDLDDDEEEDHKTDALGGRRRRLRPKRYSENDSIEEGPGNEAGFDSDDDIVGEVVYDEEYLKKRKQRRDISSSSEGDEEDEEEDQGDEYNLEDEEEDDDDDDDDDLSISEDSDSDKPRKVKQLPGRTRRETKRRSVDEIQSGLRRSKRATRNTINYQQYELSESETEVTKPEKSDASGDHSDPSENGEYMSESEGSGNDGEDHEMKVDEPVTFPAVEEENELNQPAAEKLSSPGQEEAEGMGKRRFLDLNELAPSPGFDDGPIPDTIMKDEDNDY* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2195 703 MobiDBLite consensus disorder prediction 574 592 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 483 502 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 1 35 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 379 398 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 593 615 - -
Lja4g2195 703 Coils Coil 319 339 - -
Lja4g2195 703 PANTHER REMODELING AND SPACING FACTOR 1 12 702 IPR028938 GO:0006355|GO:0031213
Lja4g2195 703 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 12 702 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 503 538 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 557 573 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 404 703 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 1 27 - -
Lja4g2195 703 MobiDBLite consensus disorder prediction 624 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2195 Lja-Chr4 23657462 23665706 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lja4g2195 WHIM1 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2195 - - ccaj:109811677 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2195 4 23657462 23665706 Lja4g2195 4 23657462 23665706 ECH
Lja4g2195 4 23657462 23665706 Lja1g5599 1 98022600 98038239 PCT