Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2191 ATGGACGGCACCGACGACGATCCTTCCCTTTCCGATAGAGAAGCGGAGGAGGACGAGAACGAGAACGATGCCGCCGCTGAGGAGGATCTCCTGTCGCGGTTTTCGCTTCTTGATGCTCCTATACTCTTCTTTGTTTGTTTTCACAAGGCTTTGCGCTCTGAACTTCACCAGCTTCGTCGCTTGGCGGAAACGGCGTCGTTCCAGGATTGCCGAGAAACAGTACTTAAGCTTCAGCGGAGATTCCAGTTTCTGAAACTAGCTCATAAGTATCATTGCGCTGCTGAAGATGAGGTTATCTTCTGCGCACTGGATATACATGTGAAAAATGTGGCATGTACATATTCCCTTGAACATAACAGCACCAATGACCTCTTTGATTCTATCATTCGCTTGTTGGATGAGCTGATGGGTCCAAATGAGAATATTTCTAAGCTGTTGCAAGAACTTGTCCACTGCATTGGCATCTTGCAAACCTCCATCTACCAGCATATGCTGAAAGAAGAAGAACAGGTTTTTCCTCTGTTGATCCAGAAATTATCTACAGAAGTGCAGGCCTCACTTATATGGCAATTCATATGTAGTGTACCTATACTTTTGCTGGAGGAAGTTCTGCCATGGATGGTATCCTTCCTTCCTGCAGACAAACAAGCAGAAGTTACTCAGTGTATAAATGAAATTGCACCAATGGAAAAAGCACTACAGGAGGTTTTGGTTTCTTGGCTTGGAAGCAATAAACAAACTTTTAGTCAGACCAATTTTCAGAGTGAAGAATTTCAAAGTACTAATGGATTTCTACATATAGAAAGATCAGCTGGGATAAGTTTTTGCGATAGGAACCCCAATGAAAATATAAGTCAGATGAAAGTGAAAGGACAAGAAATAGAAGATGGGCTTAACCAGGTTAATGTGCTTCATCTCTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCGGGAAGAACTTAATCTACTAAGAAACTCCAGCTGTTTTCAGACTTTAGACTCAATACTTGTCCAACTAAAATTCTTTGCCGATGTCCTCGTTTTCTACTGCAATGCTCAGAAGAAATTCCTTCATCCTATACTGAATAAGCTTGCTTATGATCGGTTGTCCAAGTCCATGGACCAATTTTTCGGTGAAAGTCACATTGAATATATGCATCAGTTGCTATTTTATAATTCAGAAAGTGAGCCTTCAACCAAATTTGTTGAGAAGCTTTGCGGAAAACTTGAATCATTTGTATCAGGAGTCAACAGACAATTTGCTTTTCAAGAAATTGAGGTATTTCCTGTCATTGGAGAGAAGGGCAGAAATGGAATGCAATCGAGGCTTCTAAGTTTGAGCCTGCATATGATGCCACTTGGGCTGCTAAAATGTGTCATAACTTGGTTTTCAGTTCACTTGTCTGAGAAAGAATCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAATAATTCCGTCTGTAAAGCTTTTGCACCACTGTTACACGAGTGGTTCCACATTGGTTATTCAGGTAAAACCTCTATTGAAAAATTTCGACAAGACTTGCAGCAAATGTTCAAAAGTAGACACTCTTTTTTACCTGAGCAAATGAATGAAGCTTGTGGGTTTTCTTTCTTAAATTCTGATAAGCAGCCTCATGATACCTCTGGCAAGAGTTGTTTACCCAACTCCTCATCTTCTGAATCCAACAATGTGAGCAAGTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTCCCTGCCACTGCTGTGAAGTTATATCAGTATCCTAGATTCCATGCAGAAGATTGCTCTTCTACTTCCTTTCTTGATGATCCAAAACCAATTGACCTTATATTTTTATTTCACAAGGCTATGAAGAAAGATTTGGATTACCTAGTTCTTGGCTCTGCTCAGTTAGAAGACAATGATGAGTTGCTGATGGATTTCCACAAACGGTACCACCTCATATGTTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGATAGTTTTCCCAGCTTTGGAGGCAACGGGTAAACTCAAAAACATTAGCCATGCCTACACCTTTGATCACAAACACGAAGTTGAGCACTTCAATAAAATATCTCGCATCCTTGATGAGATGTCTGAATTACACCTTTCGGTTTCTACTATTGATTCAAAGATTAGACAGAAGAGAATGCTGAGGAATCATCATTTATGCAGGAAGCTACAAGAAAGGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGTGAGGAAATAGAAATTTGGTCTATAATCAGAAAATTCTTCTCAAATCAAGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGTGCAGAAATATTAAAAGATATGATACCTTGGCTAATGGCATCTTTAACACAGGAAGAACAACATGTTTTAATGTTCTTATGGACCATGGCTACTAAAAATACAATGTTTGATGAATGGTTAGGTGAATGGTGGCATGGGTACAGTATAGCTAAGGTAAAAGAGGGATCAAATGATGCCCCTCTACAGACTGTTGAGCCCCTGGAGATTATATCAAAATATTTATCTGAAGAGGTTCTAGATGAATTAAAGGAGGGATCCTCTGCCAGCAGAAGCATAAATTTTTTGCAGATGGATCATGTTGGTGATAATGTTGAGCTGTCCAACCACAATTTTGATGATGACAATAAGGTTCATTGTGCAGAACATAATAATGATCAATGTTCAAAATGCACAAATCAATTTCATGATAATGACAAACATGCCCGCAACGAAGTGACAGGTATCACAAATCCAATATGCAAAGAAGTTGAGTCTTTTCAATTAGGTGACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAACATGAGCTGGAAGTGGTGATAAGAAGGGTATCTAGTGACTCTTGCCTAGATCCTCAGAAAAAGCCATACATAATACAGACATTACAAATGAGCCGTTGGATTATTAGCCAACAGATCTCTTCTACAGAATTCTATATCAAAAGCGAGGGACAGGAATTTCCTGGGAAGCATCCATCTTACAGGGACCCTCTCAAACTAATCCATGGTTGCAAACACTACAAGAGAAACTGTAAGCTTTTAGCTCCCTGCTGCAACCAACTTCATACTTGCATACATTGCCATAATGAGGTATCAGATCATTCAATCGACAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATTAGTGCTACATGCTCAACAGTTTCTTGTGGTAATTTGTCCATGGCGAAATATTACTGCAGGATATGCAAATTGTTTGATGATGAAAGGCAAATTTACCACTGTCCCTATTGCAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGAATACTTTCACTGTATGAATTGCAATGCTTGCATGGGTCGTACTCTTATGATTCATACATGCAGGGAGAAATCTTTAGAGGATAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCAGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACCTGCTTCAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAAACATGCAGGTATATTTTGAGATGTTAGATGCATTAGTGGCTGAAGAGAAAATTTCTGATGAGCTTTCTGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGCAGCCGTCTTTCACTGGCTTTACCACAAATGCCCTTCTTGTGGTTCGTATAACACCAGAGTTCTTTGA 3798 0.3942 MDGTDDDPSLSDREAEEDENENDAAAEEDLLSRFSLLDAPILFFVCFHKALRSELHQLRRLAETASFQDCRETVLKLQRRFQFLKLAHKYHCAAEDEVIFCALDIHVKNVACTYSLEHNSTNDLFDSIIRLLDELMGPNENISKLLQELVHCIGILQTSIYQHMLKEEEQVFPLLIQKLSTEVQASLIWQFICSVPILLLEEVLPWMVSFLPADKQAEVTQCINEIAPMEKALQEVLVSWLGSNKQTFSQTNFQSEEFQSTNGFLHIERSAGISFCDRNPNENISQMKVKGQEIEDGLNQVNVLHLWHNAIKKDLKEIREELNLLRNSSCFQTLDSILVQLKFFADVLVFYCNAQKKFLHPILNKLAYDRLSKSMDQFFGESHIEYMHQLLFYNSESEPSTKFVEKLCGKLESFVSGVNRQFAFQEIEVFPVIGEKGRNGMQSRLLSLSLHMMPLGLLKCVITWFSVHLSEKESRSILYCIKKGNNSVCKAFAPLLHEWFHIGYSGKTSIEKFRQDLQQMFKSRHSFLPEQMNEACGFSFLNSDKQPHDTSGKSCLPNSSSSESNNVSKYETPYSTGINLHIFFPATAVKLYQYPRFHAEDCSSTSFLDDPKPIDLIFLFHKAMKKDLDYLVLGSAQLEDNDELLMDFHKRYHLICFLHQIHSDAEDEIVFPALEATGKLKNISHAYTFDHKHEVEHFNKISRILDEMSELHLSVSTIDSKIRQKRMLRNHHLCRKLQERCKSMHKLLSDHINREEIEIWSIIRKFFSNQEQGKIIGCMLGRISAEILKDMIPWLMASLTQEEQHVLMFLWTMATKNTMFDEWLGEWWHGYSIAKVKEGSNDAPLQTVEPLEIISKYLSEEVLDELKEGSSASRSINFLQMDHVGDNVELSNHNFDDDNKVHCAEHNNDQCSKCTNQFHDNDKHARNEVTGITNPICKEVESFQLGDKSGHYDRLLKLSQHELEVVIRRVSSDSCLDPQKKPYIIQTLQMSRWIISQQISSTEFYIKSEGQEFPGKHPSYRDPLKLIHGCKHYKRNCKLLAPCCNQLHTCIHCHNEVSDHSIDRKSITKMMCMKCLMIQPISATCSTVSCGNLSMAKYYCRICKLFDDERQIYHCPYCNLCRVGKGLGVEYFHCMNCNACMGRTLMIHTCREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGNMQVYFEMLDALVAEEKISDELSGQTQVILCNDCEKKGAAVFHWLYHKCPSCGSYNTRVL* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2191 1265 Gene3D - 1230 1265 - -
Lja4g2191 1265 SUPERFAMILY Zinc hairpin stack 1096 1150 IPR037275 -
Lja4g2191 1265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1152 1203 IPR013083 -
Lja4g2191 1265 CDD Hr-like 47 173 - -
Lja4g2191 1265 ProSiteProfiles Zinc finger CHY-type profile. 1023 1092 IPR008913 GO:0008270
Lja4g2191 1265 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 32 1265 - -
Lja4g2191 1265 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 32 1265 - -
Lja4g2191 1265 MobiDBLite consensus disorder prediction 549 568 - -
Lja4g2191 1265 Pfam CHY zinc finger 1030 1105 IPR008913 GO:0008270
Lja4g2191 1265 ProSiteProfiles Zinc finger CTCHY-type profile. 1095 1158 IPR017921 -
Lja4g2191 1265 Pfam Zinc-ribbon 1206 1263 IPR039512 -
Lja4g2191 1265 Gene3D nmb1532 protein domain like 609 781 - -
Lja4g2191 1265 Gene3D nmb1532 protein domain like 40 193 - -
Lja4g2191 1265 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g2191 1265 ProSiteProfiles Zinc finger RING-type profile. 1159 1201 IPR001841 -
Lja4g2191 1265 Pfam Hemerythrin HHE cation binding domain 48 175 IPR012312 -
Lja4g2191 1265 CDD Hr-like 615 760 - -
Lja4g2191 1265 SUPERFAMILY CHY zinc finger-like 1021 1086 IPR037274 GO:0008270
Lja4g2191 1265 SMART ring_2 1159 1200 IPR001841 -
Lja4g2191 1265 CDD RING-H2_Pirh2 1158 1201 - -
Lja4g2191 1265 Coils Coil 308 328 - -
Lja4g2191 1265 Pfam Ring finger domain 1157 1200 IPR001841 -
Lja4g2191 1265 SUPERFAMILY RING/U-box 1146 1206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2191 Lja-Chr4 23612902 23624650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2191 39 856 C2H2 Transcription Factor Family AT3G18290 32.611 1.54e-128 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2191 K16276 - gmx:100802706 2053.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2191 4 23612902 23624650 Lja4g2191 4 23612902 23624650 ECH