Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2190 ATGACCCTCAAGGGCGGCACAACACAGGCCTGCGCCGCGTGCAAGTACCAGCGCAGAAAGTGCACTCCCGAGTGCCTTCTCGCGCCTTACTTCCCCGCAGACCAGCCCAAGATCTTCCTCAATGTCCACAAGCTGTTCGGAGTCAGCAACATTGTAAAGATTTTAAAAATCCTGGAGCCTAGTCAGAAGAAAATCGCCATGGACTCCATCATCATTCAAGCTAATTACAGGGATAAGTACCCTGTGCACGGTTGCTGCGAGGAAATTGGCAGGCTTCAGTACCAAATTTGGCTTGTGGAAGAAGAGCTTCATGCAGTTTACCAACAGCTTGAAATGTGCAGGCAGCAGCAGCAACACCAGCAGCATAATGACGGCATGGCATTACCTGATGATGTTACTTCGCAATTAGAATTGGGAATGGCACCACGTTCTAATAATGCGCTGCAACTCTTTAACCATCCTCCACCGCAACAGCAGAGTTACAACACGGTTGCTGCGATATCGCAGCAACATTCTTACTCCAACAGCAACAGCGTGGATTATAACAATAACTCGCTGTACATGGATTCTAAGGATAATGTCACAAATCCTTTATGGGTTCAGTATCAGTACCAAAACAACAACAGCAATGATTCAGTAGCTATGCAAACTCAGTTGGTTGCTTCGCAACAGCCATTAGCCATCCAACAAGAAGTTGTTGAAGATTATGATGAGATGCATCCATTTTTTGACACAGTTGATGATAGACAATCATACGTTTATTCCAAGGAGGCTTATGAATCAAGCTCAGAAGAATCACTGAAAGACACGAGAAAGGGCAGTGAGCATGTTTCTGAGAATGAACTGAAGAGTGCTGCTGCATGCTTCAGCCTTACCAGTGTTAACTGA 888 0.4572 MTLKGGTTQACAACKYQRRKCTPECLLAPYFPADQPKIFLNVHKLFGVSNIVKILKILEPSQKKIAMDSIIIQANYRDKYPVHGCCEEIGRLQYQIWLVEEELHAVYQQLEMCRQQQQHQQHNDGMALPDDVTSQLELGMAPRSNNALQLFNHPPPQQQSYNTVAAISQQHSYSNSNSVDYNNNSLYMDSKDNVTNPLWVQYQYQNNNSNDSVAMQTQLVASQQPLAIQQEVVEDYDEMHPFFDTVDDRQSYVYSKEAYESSSEESLKDTRKGSEHVSENELKSAAACFSLTSVN* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2190 295 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Lja4g2190 295 MobiDBLite consensus disorder prediction 261 279 - -
Lja4g2190 295 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lja4g2190 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 276 - -
Lja4g2190 295 MobiDBLite consensus disorder prediction 259 279 - -
Lja4g2190 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 4 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2190 Lja-Chr4 23610766 23611974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2190 1 258 AS2 family AT3G47870 41.254 6.62e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja4g2190 LOB 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2190 - - lja:Lj4g3v1600420.1 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2190 4 23610766 23611974 Lja4g2190 4 23610766 23611974 ECH