Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2189 ATGGGACCCAAAAAGCGAAACCCTCCTTCTACTCGTTCAAAACAATCTCCGGCGGCTTCTCCGGTGCCGCAATCGGCCACCGGCGGAGCCGCCAATGCTCCCACTCCACCCGACCCTGACTCCCCCAACGCTCCTGATCAAAATCCCCCTAACCCTAGCAAGATCGAATTGCCTCCCACTCAATCGGAGGGTTCCGGTTCCGATTACTTCACCGCAATCAAGCTGGAATGCGAGCGAGCCCTCACCACGTTCCGCCGTGGTAACCACAACAGGGCGATGAAGCTCATGAAGGAGCTGTGTGTGAAGGAGGAGGGCTCGGTTCACTCGGCTTTTGTTCACCGAATTCATGGGTTTGTGTGCTATAAATTGGCGTCGTCTATTAGTGATACTACTGCGAAGCAACGGCATTTGAGGAACGCGCTTGAGTCGTCGCGGAGGGCTGTTGAGCTTTCCCCGAATTCGGTTGAGTATGCGCATTTCCATGCCACTGTGTTGTTGGAGGCAGCGAGTGAGGCGAAGGACTTTGAGGATGTGGTGCACGAGTGTGAGAGGGGGCTTGCTATTGAAAACCCCAGTGATCCTCTGAAGGAGACTTTGCAGGATGAGAGTGAGCAGAAAGAGACTACTTCAGAAGGGAGGATAGCAAACATGCAGAATGAGTTGAAGCAGCTGATTCAGAAGTCGAACATTGCTTCCTTGTCATCTTGGATGAAGAATCTGAGTAATGGGGAGGAGAGGTTTCGGTTGATTCCCCTGAGGAGGGCGGCAGAGGACCCAATGGAGGTGAGGTTGGTTCAGACTAGAAGGCCGAATGAGATCAAGAAGGTGACAAAGACGCCAGAGGAAAGAAGAAAAGAAATTGAAGTTCGAGTTGCTGCGGCAAGGCTGATGCAACAGAAGTCAGGGTCACCCCTATCTCCGAATGAAGGAGATAGGGATGACAGGGCACTGGATTCATCTTCGGGGTCAGGTCAGAGGATAGGCGAGAGGAGAAGGCATGGGAATATGAGAAAGAATGGCCTTACAGATGAAAGGAGAAATTGGGTGCTGTCATATTGGAATTCTGTGAGCATGGATAGGAAGAGGGACTGGCTTAGGATTAAAATTTGTGATCTCATGTCCCACTTTGGTTCTTCAAAGGATACTTTGCCAAAAGATATTTTATCAGAAGCTTTGTTTTATGCTGAGGCCAACAGAACATGGAAGTTTTGGCTTTGCTGCCACTGTGATGAAAAATATTCCAATCCAGAATGTCACAGACGGCACGTTGTGCAGGAACACATGGAGAGTCTATCGTCAAAATTGCGGAGACTTTTGCCCCAAAGCATTGATAATGAATGGATAGATATGCTTCTTAATTGTTCTTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGCTTGACAACAAAGCAAAATTTAAGAGTTCACCATTGCCTGATGACTCTTACTTGGATAATCGTACTCATGACTACAATGATTGTTTTCAAGATGCAAGCAGCTCTTACCATGAGAATGAAGATTTAGCCTACAGTCTTCATAGTCGTACGACAGATAGCAGTGACTATTGTAAAATTGTAGAAAATGATGTTAGAGAGGGTGCTGACGACCAACAATTAACGGAAAATCCTGCTACTGATCGTTGGCCTGTATCTGATGACTTAGAGCGTGTAAAACTACTGGAGAAAATTCATGCAGTATTTGAGTTGCTTATTCGACACAAATGTCTTGCTGCTAGTCATCTTAACAAGGTCATGCAATTTAGTATGGGTGAAATACAGGGTCTTGCTGCTGGTTCTCAACTTCTGAAACATGGTGTAGATCAAACACCAATGTGCATATGCTTTTTGGGAGCTTCTCAGCTTAAGAAAATTCTCCAATTCCTGCAGGAAATATCTCATGCTTGTGGATTGGGAAGATATGCTGATAAAAGTGGCAGTCCCGTGAATGATACACCTAATATTAGTCAAGGTCCTGAGATCACAGATAAGATTATTCTCAGTGCAGATGCATCATGCCTTCTTCTGGATGAGTGTCTACTGCCAAGACAAATCACTCCTAGTACAGCCCAGGGGGCTGTCTTGGATGACATGACTGCACCAAGTTCTCCTGATGGATATTTTAAATATAATGATGCTTTGCTATCTTGGATATTTTCGGGTTCACCTATTGGGGATCAATTGACGTCATGGATGCGAACCAAAGAAGATAAAATACGACAAGGTGAGGAAATTGTCCGGGTACTTGAGAAGGAGTTTAGTCACCTACAGCGCCTATGTGAGAAGAAGGGTGAGCGAATAGGTTATGAGGAAGCACTGCAGTCAGTAGAAGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGGAAGTGGTGGTGAATTTGTCCAGCGAAGCTATGAGTCTGTCTTAAGAAAGCGGAGAGAAGAGCTCATTGAGAGTGAGAATGATGTGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTATTGCAAGAAGCAGAAGCAATGAATGTTAATCAATTCAGCTATGAGGAAACTTATGCTGGTGTGAATTCTCAGTTGTGTGACTTGGAATCCGGTGAAGAAGATGATTGGAGAATGAAGGACTACATGTATCAAATGGATGGATGTATAGAAATTGCTATCCAGAAATTGAAAGAACACGTATCTATAGAGCTCAGCAAAATTGATGCCCGAATAATTAGAAATGTTGCCGAGATGCAGCAATTGGAACTCAAGCTTGAGCCTATTTCTACTAATGATTATCGTGCAATATTAGTTCCTCTAGTGAAGTCATACCTAAGGGCACTTTTGGAAGATTTGGCTGAGAAAGATGCAAGAGAGAAATCTGATGCTGCAAGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGTTAAAGGGGGAAGTGAGAACACAAGACAGGTGGAGAAGACAAAAGATAAGAAGAAGAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCTACAAGTGGTAATGTGCAGCACTTGCTTCAAACTCAAGCTATTGATTCCAACCAGGTTGCGCCTGATAGTGACTTTCAAGATCATGAGGTCGTTTCCATGAATGGTGATGATTTGGAACAGCATGAAGATGAATTTAGACGTAAAATTGAGCTAGAAGAGGAGGAAAAAAAGCTGGAAGAAACTTTGGAATTTCAACGAAGGATTGAAAATGAGGCCAAACAGAAGCACCTTGCTGAGCAACAAAAGAAATCATCTGGGGAAGATTTAGACGACATTACCGGTAAACTTCAAGATTGTCAATTAAAAGTGGTTGCTGACGGCTCAGATGCTCACAAACATGAGCATTTGCCGAAGGAGAATGGGTGCGCAAGCAATCTTGATGGTTATCTTATTACCACAGCAAATGGTTTCGTGGTGCCAACCACATCTTCATCTGATTCAGCTGCCCAAAATATTATCCATTTGCATCAGTCGGAAGTTAAACAAGCAGATATGCCTAATGGAATTGTTCCAGAGAATGGTCTACCTTTGCCTGATCGGCGTGTAGGCAAAAAGCATAAACGACATAAGAATTCTTCCAAACTTGTTGACGGAAAGTTTGAATCTCTCTCCCTGGAAAAGGAGAGAACGGGTGGTACACACATTGACAATAACTTAAGAGAGCAGGCTAAATTCCATAACAATCAAGATGCAAACAAGGAGACCAACGGATCAACTGTGGTAAGAGAATTACAAGTGGAAGACGAGGAGGAGGAAAGATTTCAAGCTGATCTTAAAATGGCCGTACGCCAAAGCCTGGACACATATCAAGCACGTGGAAATTTGCCTTCAGTTTCCAGCTTGAGAATGTCGCAGAGAGCTGTTTCACAAGTAGATTGTTCGGGTTTTCCACAAGTGGAAGACTCAACTGATGATGTGAATGGAGCTACTTCGCTTGGTACTGGACTGAGAAATGAAGTGGGCGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTAAGGTGGAATTTCTTGGCAGATCAAGATCGGAGCATGATCATGTGGGTAATCCCTGTGTTGTCTGTGCCTTGTATGAAATATTTATTGCATTGGACCTTGCATCAAAGGATTCCAGGAGAGAGGCAGTTGCGCCTACTTCCCTGCGGATTGCTCTAAGCAACCTGTACCCACATAGCAACTTCTTTCAGGAGGCTCAGATGAACGATGCTTCTGAGGTACTGGCAGTGATATTTGATTGCCTGCATCGATCATTTATGCGTGGTTCAAGTGTTTCTGATGCAGAATCAGTGGAAAGCAACTGCGCGGGGTCTTGGGATTGTGCAAACACTAGTTGTGTAGCACATTCACTTTTTGGAATGGACATTTTTGAACAAATGAACTGCCACAATTGTGGTCTTGAGTCCAGACATTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTCCGAACTATGAAGGTTATGTTTACTGAAAGCTCCTTTGATAAACTTTTGAATCTTGTTGAGATGAACCATCAATTGGCTTGTGATATGGAAGTTGGTGGCTGTGGCAAGCTAAACCACATCCATCACTTTCTTTCAACTCCACCCAATGTTTTTATGACAGTTCTAGGCTGGCAAAATACATGTGAGAGTGCTGATGATATAACCGCAACTCTGGCAGCTCTTAGCCCTAAAATAGATATCAGCATCCTTTATCGTGGTTTAGATCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTACGGCCAGCATTATCATTGCTTTGCTTATAGCCATGACCATGAACAATGGATTATGTATGATGACAAGACTGTCAAGATAATTGGTGGATGGGCGGATGTTCTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAG 4947 0.4348 MGPKKRNPPSTRSKQSPAASPVPQSATGGAANAPTPPDPDSPNAPDQNPPNPSKIELPPTQSEGSGSDYFTAIKLECERALTTFRRGNHNRAMKLMKELCVKEEGSVHSAFVHRIHGFVCYKLASSISDTTAKQRHLRNALESSRRAVELSPNSVEYAHFHATVLLEAASEAKDFEDVVHECERGLAIENPSDPLKETLQDESEQKETTSEGRIANMQNELKQLIQKSNIASLSSWMKNLSNGEERFRLIPLRRAAEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLMQQKSGSPLSPNEGDRDDRALDSSSGSGQRIGERRRHGNMRKNGLTDERRNWVLSYWNSVSMDRKRDWLRIKICDLMSHFGSSKDTLPKDILSEALFYAEANRTWKFWLCCHCDEKYSNPECHRRHVVQEHMESLSSKLRRLLPQSIDNEWIDMLLNCSWKPLDVSAAVKMLDNKAKFKSSPLPDDSYLDNRTHDYNDCFQDASSSYHENEDLAYSLHSRTTDSSDYCKIVENDVREGADDQQLTENPATDRWPVSDDLERVKLLEKIHAVFELLIRHKCLAASHLNKVMQFSMGEIQGLAAGSQLLKHGVDQTPMCICFLGASQLKKILQFLQEISHACGLGRYADKSGSPVNDTPNISQGPEITDKIILSADASCLLLDECLLPRQITPSTAQGAVLDDMTAPSSPDGYFKYNDALLSWIFSGSPIGDQLTSWMRTKEDKIRQGEEIVRVLEKEFSHLQRLCEKKGERIGYEEALQSVEDLCLEEGKKRGSGGEFVQRSYESVLRKRREELIESENDVMYVSNRFELDAISNVLQEAEAMNVNQFSYEETYAGVNSQLCDLESGEEDDWRMKDYMYQMDGCIEIAIQKLKEHVSIELSKIDARIIRNVAEMQQLELKLEPISTNDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKIVKGGSENTRQVEKTKDKKKNKDHRKTRDLKATSGNVQHLLQTQAIDSNQVAPDSDFQDHEVVSMNGDDLEQHEDEFRRKIELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGEDLDDITGKLQDCQLKVVADGSDAHKHEHLPKENGCASNLDGYLITTANGFVVPTTSSSDSAAQNIIHLHQSEVKQADMPNGIVPENGLPLPDRRVGKKHKRHKNSSKLVDGKFESLSLEKERTGGTHIDNNLREQAKFHNNQDANKETNGSTVVRELQVEDEEEERFQADLKMAVRQSLDTYQARGNLPSVSSLRMSQRAVSQVDCSGFPQVEDSTDDVNGATSLGTGLRNEVGEYNCFLNVIIQSLWHLRRFKVEFLGRSRSEHDHVGNPCVVCALYEIFIALDLASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHRSFMRGSSVSDAESVESNCAGSWDCANTSCVAHSLFGMDIFEQMNCHNCGLESRHLKYTSFFHNINANALRTMKVMFTESSFDKLLNLVEMNHQLACDMEVGGCGKLNHIHHFLSTPPNVFMTVLGWQNTCESADDITATLAALSPKIDISILYRGLDPKSTHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKIIGGWADVLTMCERGHLQPQVLFFEAVN* 1649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2189 1648 MobiDBLite consensus disorder prediction 1 67 - -
Lja4g2189 1648 Pfam Protein of unknown function (DUF627) 79 190 IPR006866 -
Lja4g2189 1648 Coils Coil 207 227 - -
Lja4g2189 1648 MobiDBLite consensus disorder prediction 190 211 - -
Lja4g2189 1648 MobiDBLite consensus disorder prediction 35 56 - -
Lja4g2189 1648 MobiDBLite consensus disorder prediction 296 338 - -
Lja4g2189 1648 Coils Coil 732 752 - -
Lja4g2189 1648 MobiDBLite consensus disorder prediction 195 209 - -
Lja4g2189 1648 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 2 1648 - -
Lja4g2189 1648 Pfam Ubiquitin carboxyl-terminal hydrolase 1316 1623 IPR001394 GO:0004843|GO:0016579
Lja4g2189 1648 PANTHER UBIQUITIN SPECIFIC PROTEINASE 2 1648 - -
Lja4g2189 1648 MobiDBLite consensus disorder prediction 307 338 - -
Lja4g2189 1648 SUPERFAMILY Cysteine proteinases 1315 1645 IPR038765 -
Lja4g2189 1648 MobiDBLite consensus disorder prediction 1166 1193 - -
Lja4g2189 1648 CDD Peptidase_C19 1406 1645 - -
Lja4g2189 1648 MobiDBLite consensus disorder prediction 8 31 - -
Lja4g2189 1648 Pfam Protein of unknown function (DUF629) 350 881 IPR006865 -
Lja4g2189 1648 MobiDBLite consensus disorder prediction 974 1006 - -
Lja4g2189 1648 Coils Coil 1036 1076 - -
Lja4g2189 1648 Gene3D Cysteine proteinases 1300 1646 - -
Lja4g2189 1648 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1315 1647 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2189 Lja-Chr4 23595487 23606740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2189 73 1645 C2H2 Transcription Factor Family AT3G47890 54.922 0.0 1649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2189 - - gmx:100799759 2429.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2189 4 23595487 23606740 Lja4g2189 4 23595487 23606740 ECH