Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2188 ATGGGAAACTGCAACGCGTGCGTGAGACCAGAGTCGGTAGAATCGAACCGGACGGCAAGCGAGTCGAACCGGGGGCGGAGGAGGAAAACCAAACCGAACCCATACTCAGAGTTGGGTGTGGGTGCGGTGGGAGGAACCGAGGCAACGATCCGGGTCCTGAAGGATGCGAACCCGCGGAGCCGAATCTGCGACAAGTATGTTCTCGGTCGGGAGCTTGGTCGGGGCGAGTTCGGCATAACCTACCTCTGTACAGACAAGGAAACGAAGCAGGAGCTGGCGTGTAAGACCATCTCGAAGCGGAAGCTGAGGACGGCGGTGGACGTGGAGGATATCCGGCGAGAGGCGGAGATCATGTCCACGCTGCCGGACCACCCCAACGTGGTGAAGCTCAGGGCTACCTACGAGGATGATGAGAATGTTCACCTTGTTATGGAGCTCTGCGGCGGAGGAGAGCTTTTCGACCGGATTGTTGCACGGGGGCATTACAGCGAGAGGGCGGCTGCACACGTGGCGAGGACTGTTGCGGAGGTTGTCAGAATGTGCCATGCCAATGGGGTTATGCATAGAGACCTTAAGCCTGAGAATTTTCTCTTTGCTAATAAGAAAGAGAATTCAGCTCTTAAAGCTATTGATTTTGGACTGTCTGTGTTTTTTAAACCTGGGGAGAGGTTTTCAGAGATTGTGGGGAGTCCTTACTATATGGCACCTGAGGTATTGAAGAGGAATTATGGACCTGAGATTGATATTTGGAGTGCTGGTGTGATTCTTTATATCTTGTTATGTGGGGTGCCTCCGTTTTGGGCAGAGACTGAACAAGGGGTTGCTTTGGCGATTTTGAGAGGGGTTATTGACTTCAAGAGGGAGCCTTGGCCTCAGATTTCGGATAGCGCCAAAAGCCTTGTGCGGCAGATGTTGGAACAGGATCCTAAGAAGCGCTTAACGGCTGAACAGGTGCTTGAACATTCCTGGCTACAAATTGCAAAAAAAGCTTCAAATGTACCATTAGGAGATATTGTGAGGGCAAGGCTTAGGCAGTTCTCAGTAATGAATAGATTCAAAAAGAGAGCTCTTCGGGTAATTGCGGAACATTTATCCGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACCTTGATGGATACTGACAAAGATGGCAGAGTATCATATGAGGAGCTGAAGGCTGGTTTGCAGAAGGTTGGTTCAAAATTGGCTGAGCCAGAGATAAAGTTGCTGATGGACGTGGCTGATGTTGACGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCTGTGACGATTCACTTGCAAAAAATGGAGAATGATGAGCATTTCCACAAAGCATTCATGTTTTTTGACAAAGATGAGAGCGGTTATATTGAGTTAGGTGAGCTAGAGGAAGCCTTGGCAGAGGATTCAGGAGAAACTGATACTGATGTATTGAATGATATCATGCGTGAAGTTGACACTGACAAGGACGGTCGCATCAGTTATGAGGAGTTTGTGGTAATGATGAAAGCTGGAACTGACTGGAGAAAAGCATCTAGACAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGACGGCTCGCTTCAGCTTCATGATGGGATTAGTGGCCAAGCTATTGTGGTTTGA 1647 0.4833 MGNCNACVRPESVESNRTASESNRGRRRKTKPNPYSELGVGAVGGTEATIRVLKDANPRSRICDKYVLGRELGRGEFGITYLCTDKETKQELACKTISKRKLRTAVDVEDIRREAEIMSTLPDHPNVVKLRATYEDDENVHLVMELCGGGELFDRIVARGHYSERAAAHVARTVAEVVRMCHANGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEQDPKKRLTAEQVLEHSWLQIAKKASNVPLGDIVRARLRQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVSYEELKAGLQKVGSKLAEPEIKLLMDVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFMFFDKDESGYIELGELEEALAEDSGETDTDVLNDIMREVDTDKDGRISYEEFVVMMKAGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAIVV* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2188 548 Gene3D Phosphorylase Kinase; domain 1 67 151 - -
Lja4g2188 548 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Lja4g2188 548 SMART efh_1 479 507 IPR002048 GO:0005509
Lja4g2188 548 SMART efh_1 371 399 IPR002048 GO:0005509
Lja4g2188 548 SMART efh_1 443 471 IPR002048 GO:0005509
Lja4g2188 548 SMART efh_1 407 435 IPR002048 GO:0005509
Lja4g2188 548 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Lja4g2188 548 Pfam EF-hand domain pair 372 431 IPR002048 GO:0005509
Lja4g2188 548 Pfam EF-hand domain pair 442 505 IPR002048 GO:0005509
Lja4g2188 548 Pfam Protein kinase domain 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2188 548 MobiDBLite consensus disorder prediction 1 40 - -
Lja4g2188 548 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Lja4g2188 548 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Lja4g2188 548 SMART serkin_6 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2188 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Lja4g2188 548 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Lja4g2188 548 Gene3D Transferase(Phosphotransferase) domain 1 152 332 - -
Lja4g2188 548 SUPERFAMILY EF-hand 352 531 IPR011992 -
Lja4g2188 548 CDD EFh 443 505 IPR002048 GO:0005509
Lja4g2188 548 ProSiteProfiles Protein kinase domain profile. 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2188 548 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 524 - -
Lja4g2188 548 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Lja4g2188 548 CDD STKc_CAMK 65 323 - -
Lja4g2188 548 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Lja4g2188 548 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Lja4g2188 548 SUPERFAMILY Protein kinase-like (PK-like) 62 325 IPR011009 -
Lja4g2188 548 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Lja4g2188 548 PANTHER BNAA09G44420D PROTEIN 14 524 - -
Lja4g2188 548 Gene3D - 333 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2188 Lja-Chr4 23580519 23585050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2188 1 548 EF-hand Containing Proteins AT1G74740 76.951 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja4g2188 Pkinase 9.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2188 K13412 - gmx:100800559 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2188 4 23580519 23585050 Lja4g2188 4 23580519 23585050 ECH