Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2182 ATGGAACTTAACTTCAAGCACCAACTTGGCCTTATTTGTGTGATATTGATATTTCCAGCACTGTGTAACTGCAAGGAGTATTATACTAAATCCAAAGCAACCTATTATGGCACCTCTGATGGCTATGGGACTCCAATTGGAGTTTGTGGCTTCGGAGAATATGGAAGAACGGCCAATGATGGTAATGTCGCAGCTGTGTCTGCTAGGCTATGGAAGAATGGAGCCGGTTGCGGTGCATGCTATCAGGTAAGGTGCAAAATACCACAATACCGTAATGACAATGGAGCATATGTGGTGGCAACAGACTATGGTGAGGGAGACAGAACAGACTTCATCTTGAGCCCACGCGCATTCTCGAAATTGAGATGCAACAAAACTGCATCTGAAGCATTGAAGAAACACGGTGTGCTTGATATTGAATACAAAAGAGTCCCCTGCACATTCAAGGGCAACAACATCATATTTCAAATCACTGAACACAGCAGAAACCCCGGTTACTTCGCCATCGTGATTCTCTATGTCGGTGGAAAATCTGATATCACTGGTGTTCAGATGTTGCAGAAAGAGTACCACAAATGGGAGCTTCTACGCAGGTCTTATGGTGCAGTGTTTGACATTGCTAACCCACCTAAAGGTGAAATCCGGTTGAAGTTCCAAGTGAGTGATGGCAGTGCATTGCCTCATTGGGTGGGGCCTAAGTTTGCAATCCCTGCAAATTGGAAGGCTGGAGCTACTTATTCCACAAAATTGGTGTAA 756 0.4471 MELNFKHQLGLICVILIFPALCNCKEYYTKSKATYYGTSDGYGTPIGVCGFGEYGRTANDGNVAAVSARLWKNGAGCGACYQVRCKIPQYRNDNGAYVVATDYGEGDRTDFILSPRAFSKLRCNKTASEALKKHGVLDIEYKRVPCTFKGNNIIFQITEHSRNPGYFAIVILYVGGKSDITGVQMLQKEYHKWELLRRSYGAVFDIANPPKGEIRLKFQVSDGSALPHWVGPKFAIPANWKAGATYSTKLV* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2182 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Lja4g2182 251 PANTHER EXPANSIN-B3 4 250 - -
Lja4g2182 251 Gene3D - 21 146 IPR036908 -
Lja4g2182 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Lja4g2182 251 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Lja4g2182 251 Gene3D - 147 249 IPR036749 -
Lja4g2182 251 Pfam Lytic transglycolase 64 141 IPR009009 -
Lja4g2182 251 Pfam Expansin C-terminal domain 153 226 IPR007117 -
Lja4g2182 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Lja4g2182 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lja4g2182 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Lja4g2182 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Lja4g2182 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lja4g2182 251 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lja4g2182 251 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Lja4g2182 251 SUPERFAMILY Barwin-like endoglucanases 16 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2182 Lja-Chr4 23479574 23480911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2182 9 251 Expansin Gene Family AT4G17030 48.971 8.98e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2182 - - gmx:100779487 343.969