Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2180 ATGGAAAAGGGTTTTCCAATCTGGGTTTTCATACTGATTTTCACTACAGTTTTCACCCCTTCCTCTCTTGCTCTCACCCAGGATGGTCTGACATTGTTGGAAATCAAGGGTGCTTTGAATGACACTAAGAATGTTCTCAGCAACTGGCAAGAGTTTGATGAGTCTCCTTGTGCTTGGACTGGCATCACTTGTCATCCCGGCGATGGCGAACAAAGAGTTCGCTCAATTAATTTGCCATACTCGCAACTCGGAGGCATTATATCTCCCAGCATTGGTAAACTCAGCAGGCTCCAGAGATTGGCACTTCATCAGAACAGCTTGCATGGAATTATTCCCAATGAAATTACCAATTGCACTGAGCTAAGAGCTCTGTACTTGAGGGCTAATTATTTCCAAGGAGGCATACCATCAGATATTGGAAACCTTCCATTTTTAAATATACTGGATTTGTCAAGCAACTCATTCAAAGGTGCTATACCTTCTTCTCTTGGTCGTCTCCCACATTTGCAAGTTCTGAACTTGTCTACCAATTTCTTTTCTGGAGAAATCCCTGACATTGGAGTACTAAGCACCTTCCAGAAGAACTCGTTTATTGGCAATTTAGACCTTTGTGGGCGGCAAATCCAGAAACCATGTCGGACATCATTTGGTTTCCCTGTAGTGATACCACATGCTGAAAGTGATGAAGCTGCAGTCCCTACCAAAAGATCTTCTTCACATTACATGAAGGTGGTGCTAATTGGTGCCATGACAACTTTGGGACTTTTACTCCTTGTAACCCTCTCATTCCTCTGGATCCGTTTATTGTCGAAGAAGGAAAGAGCTGTTATGAGATACACAGATGTCAAGAAACAAGTTGATCCAGAAGCAAGCACAAAACTTATTACATTCCATGGTGATCTTCCATACACGTCATCTGAAATCATAGAAAAACTGGAGTCCCTTGAAGAAGAGGATATAGTGGGGTCGGGAGGATTTGGTACTGTTTACCGAATGGTGATGAATGATTGCGGTACATTTGCTGTTAAGAGGATTGACAGAAGTCGTGAAGGGTGTGATCAAGTGTTTGAAAGAGAACTTGAGATCTTGGGTAGCATCAAGCACATAAATTTAGTAAACCTACGCGGTTACTGCAGGCTCCCTTCTGCAAGGCTACTTATCTATGATTATTTGGCCATAGGAAGCTTAGATGATCTCTTGCACGAAAATACGGAACAACCACTGAATTGGAATGATCGCCTAAATATAGCCCTTGGTTCTGCCAGGGGTTTGGCATACTTGCACCATGAATGCTGCCCGAAAATTGTGCATCGTGACATAAAATCCAGCAACATCCTTCTAAATGAAAACATGGAGCCTCATATCTCTGATTTTGGTCTTGCAAAGCTATTGGTTGATGAAGATGCCCATGTTACAACAGTGGTTGCTGGCACATTTGGATATTTGGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTATATAGCTTTGGAGTTCTATTGCTGGAACTTGTGACTGGAAAGAGGCCTACAGATCCTTCCTTTGCGAATAGAGGTTTAAATGTTGTTGGCTGGATGAACACATTACAGAAGGAAAACAGATTGGAAGACGTGGTAGACAGAAGATGCACTGATGCAGATGCAGGAACTCTTGAAGTGATTCTTGAGCTAGCAGCAAGGTGCACAGATGCAAATGCAGATGACCGTCCATCCATGAACCAAGTGTTACAGTTGCTGGAACAAGAAGTCATGTCTCCTTGCCCAAGTGATTTTTACGAGTCTCATTCAGATCACAGCTAA 1812 0.4288 MEKGFPIWVFILIFTTVFTPSSLALTQDGLTLLEIKGALNDTKNVLSNWQEFDESPCAWTGITCHPGDGEQRVRSINLPYSQLGGIISPSIGKLSRLQRLALHQNSLHGIIPNEITNCTELRALYLRANYFQGGIPSDIGNLPFLNILDLSSNSFKGAIPSSLGRLPHLQVLNLSTNFFSGEIPDIGVLSTFQKNSFIGNLDLCGRQIQKPCRTSFGFPVVIPHAESDEAAVPTKRSSSHYMKVVLIGAMTTLGLLLLVTLSFLWIRLLSKKERAVMRYTDVKKQVDPEASTKLITFHGDLPYTSSEIIEKLESLEEEDIVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGCDQVFERELEILGSIKHINLVNLRGYCRLPSARLLIYDYLAIGSLDDLLHENTEQPLNWNDRLNIALGSARGLAYLHHECCPKIVHRDIKSSNILLNENMEPHISDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFANRGLNVVGWMNTLQKENRLEDVVDRRCTDADAGTLEVILELAARCTDANADDRPSMNQVLQLLEQEVMSPCPSDFYESHSDHS* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2180 603 PANTHER RECEPTOR-LIKE PROTEIN 55 7 602 - -
Lja4g2180 603 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Lja4g2180 603 SUPERFAMILY L domain-like 26 214 - -
Lja4g2180 603 SUPERFAMILY Protein kinase-like (PK-like) 297 584 IPR011009 -
Lja4g2180 603 ProSiteProfiles Protein kinase domain profile. 315 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2180 603 Pfam Leucine rich repeat 72 130 IPR001611 GO:0005515
Lja4g2180 603 Gene3D Ribonuclease Inhibitor 26 214 IPR032675 -
Lja4g2180 603 Gene3D Transferase(Phosphotransferase) domain 1 392 591 - -
Lja4g2180 603 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Lja4g2180 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Lja4g2180 603 SMART serkin_6 315 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2180 603 Pfam Protein kinase domain 316 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2180 603 Gene3D Phosphorylase Kinase; domain 1 277 390 - -
Lja4g2180 603 PANTHER LRR RECEPTOR-LIKE KINASE 7 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2180 Lja-Chr4 23461548 23466618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2180 8 592 Receptor kinase-like Gene Family AT2G35620 49.744 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lja4g2180 Pkinase 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2180 - - gmx:100797653 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2180 4 23461548 23466618 Lja4g2180 4 23461548 23466618 ECH