Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2178 ATGGCGGGAGGGAGGGTCTTTAGCGGCGGTTCTGCTGCTCCTGCAAATGTTTCCGATACCAGTCTTTTGCTTCAGAATCAACCTCCTGATTCTTCTCTCTTCCTCTCTACCTCTGCTTCTTTTCTCGGTTCAAGATCCATGGTGAGCTTCGCAGATAATAAATTAGGGCAAACGCGGTCGTTCTTCTCCGCGTTTGACCTCGATGAGAACGGCGATGAGGTCATGGACGAGTACTTTCACCAATCGGAGAAGAAGCGCCGTCTCTCTGTTGACCAAGTTCAGTTTCTGGAGAAGAGCTTCGAGGTGGATAACAAGCTCGAACCTGACAGGAAAACCAAGATTGCCAAGGACCTTGGTTTGCAGCCACGCCAAGTCGCAATCTGGTTCCAGAACCGCCGTGCACGGTGGAAGACGAAACAGCTTGAGAAGGATTATGATTCTCTGCATAGTAGCTTTGAGAGTCTCAAATCCAACTATGATAATCTTCTCAAGGAGAAAGACATGTTAAAAGCTGAGGTGGCAAGTCTCACTGAGAAGGTGCTTGCAAGAGAGAATTTGAAACAAGTTGAAAGTGAAACAAAGGGATTGGTTGAACCACCCCAAAGGCCTTTACTTGATTCAGTTTCAGAGGGTGAAGAATCTAAAGTCTCTGTTGGGGCTTGTAAACATGAGGATATCAGTTCAGCCAGGAGTGAGAGTTTGGATTCTGATAGCCCACGTTACAGGGATGGATATGGAGTTAACTCAGCAGTGCTAGAGACATGTGATTCTTCTTATGTGGTTGAACCTGATCAATCGGATATGTCACAGGATGAGGAAGACAACCTGACCAAGACCCTGTTGCCTCCATACATGTTTTCCAAACTTGGAGATATGGATTACTCCGACCCGCCTGAAAGTTCATGTAATTTCGGATTTCCGGAGGAAGATCATGCCCTTTGGTCATGGTCTTACTGA 957 0.466 MAGGRVFSGGSAAPANVSDTSLLLQNQPPDSSLFLSTSASFLGSRSMVSFADNKLGQTRSFFSAFDLDENGDEVMDEYFHQSEKKRRLSVDQVQFLEKSFEVDNKLEPDRKTKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLHSSFESLKSNYDNLLKEKDMLKAEVASLTEKVLARENLKQVESETKGLVEPPQRPLLDSVSEGEESKVSVGACKHEDISSARSESLDSDSPRYRDGYGVNSAVLETCDSSYVVEPDQSDMSQDEEDNLTKTLLPPYMFSKLGDMDYSDPPESSCNFGFPEEDHALWSWSY* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2178 318 SUPERFAMILY Homeodomain-like 69 141 IPR009057 -
Lja4g2178 318 CDD homeodomain 84 140 IPR001356 GO:0003677
Lja4g2178 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 25 315 - -
Lja4g2178 318 Gene3D - 87 133 - -
Lja4g2178 318 SMART HOX_1 82 143 IPR001356 GO:0003677
Lja4g2178 318 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Lja4g2178 318 Gene3D - 134 182 - -
Lja4g2178 318 Pfam Homeobox associated leucine zipper 139 180 IPR003106 GO:0006355|GO:0043565
Lja4g2178 318 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Lja4g2178 318 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Lja4g2178 318 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Lja4g2178 318 Coils Coil 152 179 - -
Lja4g2178 318 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Lja4g2178 318 MobiDBLite consensus disorder prediction 190 222 - -
Lja4g2178 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 315 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2178 Lja-Chr4 23441998 23443930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2178 43 275 Homeobox Transcription Factor Family AT3G01470 42.616 1.74e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja4g2178 Homeodomain 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2178 - - gmx:100799054 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2178 4 23441998 23443930 Lja4g2178 4 23441998 23443930 ECH