Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2172 ATGGAAGCTACCAAGCTTAGATTGCTCTTATTTTTTGTATTATATCTTGTTGCATTCCCTACCCTGAGGGCTAACATAGCTCAATTCGACCAAGTTTGGCAGGAGCGATCTCAGCATGCCAAAAGTGCAGCACTACAGGCTTATAGGCCAAACCCTGAGCAAGTTACTGTTGATTTCAATAAGCATGTGAACGAGAATATGAATGGCTCCAACAACACAAGGAGGGGTTTAACATCCAAGTACACAGGTCCATGCACGGCCACAAACCCCATCGACAGTTGTTGGAGATGTGATCCAAACTGGGAAAAGAACCGCAAGAAGCTAGCAGATTGTGCCATGGGTTTCGGTCACGGCACAACCGGAGGCAAAGCCGGCAAAATCTATGTTGTCAATGACCCCTCCGACCATGAACTCATCAACCCAAAACCAGGGACATTAAGACACGCTGCAATTCAAAAGGAACCATTGTGGATCATTTTTGCACATGACATGACCATCAAACTAAGTGCAGAGCTCCTACTAACTGATGACAAGACCATAGATGCACGCGGCGCAAACGTTCATATCAGTCATGGTGCTCAAATCACAATGCAGTATGTGAAAAACATAATCATTCATGGTTTGCACATTCATGATATCAAAAAATCTGGTGGTGGCATGATTAGGGACTCGGTGAATCACGTTGGAGTCCGCACGCAGAGTGATGGTGATGGAATTTCAATGTTTGGAGCTACTCACGTTTGGATTGATCATATTTCTTTGTCCAATTGTGATGATGGTCTAGTTGATGCTGTGGAGGGATCAACAGCTATCACCATCTCTAATTGCCACTTGACCCATCATAATGATGTTATGTTGTTTGGAGCAAGTGATGTGTTTTCAGGAGATAAAGTGTCGCAAATAACCGTGGCTTTCAACCATTTTGGGCAAGGACTGGTACAGAGGATGCCAAGGTGCAGGTGGGGTTTCTTTCACGTTGTCAACAATGACTACACTCACTGGCTAATGTATGCCATTGGTGGTAGCTCACATCCCACCATCATTAGCCAGGGTAATCGCTTTATTGCTCCTCAAAACTCAGCTGCTAAGGAGGTGACAAAGAGAGATTATGCACCTGAAAGTGTGTGGAAGTCATGGAATTGGAGATCAGAGGGTGACTTAATGATGAACGGAGCCTTCTTTGTTGAGTCTGGAAGTAAGGTCGCAAACATCAAAACAGACATTGTTGCAAAGCCTGGGACCTTTGCAGCAAGCCTAACTCGCTTTGCAGGTGCTCTAAAATGTGTAGTAAATAAGCCATGCTGA 1305 0.4467 MEATKLRLLLFFVLYLVAFPTLRANIAQFDQVWQERSQHAKSAALQAYRPNPEQVTVDFNKHVNENMNGSNNTRRGLTSKYTGPCTATNPIDSCWRCDPNWEKNRKKLADCAMGFGHGTTGGKAGKIYVVNDPSDHELINPKPGTLRHAAIQKEPLWIIFAHDMTIKLSAELLLTDDKTIDARGANVHISHGAQITMQYVKNIIIHGLHIHDIKKSGGGMIRDSVNHVGVRTQSDGDGISMFGATHVWIDHISLSNCDDGLVDAVEGSTAITISNCHLTHHNDVMLFGASDVFSGDKVSQITVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSSHPTIISQGNRFIAPQNSAAKEVTKRDYAPESVWKSWNWRSEGDLMMNGAFFVESGSKVANIKTDIVAKPGTFAASLTRFAGALKCVVNKPC* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2172 434 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Lja4g2172 434 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Lja4g2172 434 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Lja4g2172 434 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Lja4g2172 434 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Lja4g2172 434 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Lja4g2172 434 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Lja4g2172 434 SUPERFAMILY Pectin lyase-like 89 425 IPR011050 -
Lja4g2172 434 Pfam Pectate lyase 184 354 IPR002022 -
Lja4g2172 434 Gene3D - 88 427 IPR012334 -
Lja4g2172 434 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Lja4g2172 434 SMART amb_all 163 360 IPR002022 -
Lja4g2172 434 PANTHER PECTATE LYASE 6 434 - -
Lja4g2172 434 PANTHER PECTATE LYASE 18-RELATED 6 434 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2172 Lja-Chr4 23402482 23404959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2172 1 434 Polysaccharide Lyase AT3G01270 55.368 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2172 K01728 - gmx:100801864 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5490 1 93973020 93977501 Lja4g2172 4 23402482 23404959 ECH
Lja1g2894 1 34969781 34971956 Lja4g2172 4 23402482 23404959 ECH
Lja2g1640 2 16319169 16321666 Lja4g2172 4 23402482 23404959 ECH
Lja2g1110 2 10525568 10527945 Lja4g2172 4 23402482 23404959 ECH
Lja4g2172 4 23402482 23404959 Lja4g2172 4 23402482 23404959 ECH