Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2169 ATGGATCAGTTTGTTTCAGGGAGACCAGAGGATGGAGATTGTGGAGTACTCAAGGAAGAGAAGAAAAGTGAGAATAGCGTTTGTGATGATCAAAGTTCTCATAAACAGGATACTGTTGTTGAGGAGCTACCCATTGCAAATGCTGAAATGTCCATGGTGGAGGCTGAACCAAGCGCATCCCCATCCATGAAGGAAGATGAGGTTGATGATCAGCTTGAGATTACTAAAGCCCAAATGGGCGAGGTGAGAGAGGAAAATCAACGGTTAAAGATGAGCTTGAACAAAATAATGAATGAATACCGGACACTAGAAATGCAATTCCAAGATATAGCTAAGCAAGATCAAACAAAGAAGAATATTGTGGCTGATGATAATAACCATCAAGAAATAATGGAGGAATCAGATCTTGTGTCCCTCAGCCTTGGAAGAGTTCCTAGCAATCCAAGAAATATCAAAGTCTCTAAACCATTGAAGGATCATGAAGAGTTTAATGAAGACTTGACTCTTGGACTAGACTGTAAACTAGAAACATCAAAATCTGGGAGCACAAATGAAGCAGCTTTGCCAAATCCAAGCCCTGTCAATAGTTGTGAAGTGCCAAAGGAAGAAGAAGCTGGGGAGACTTCACCACCTACTACTAAGGCACCACTCAAGACCATGAGAGATATTGAGGATGAAGTTGCTCAACAAACTCATGCAAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGATACCCCCACAATGAATGATGGGTGCCAATGGAGGAAATATGGACAAAAGATTTCAAAGGGAAATCCTTGCCCGCGAGCTTACTATCGTTGCACCGTTGCACCATCCTGCCCAGTAAGAAAACAGGTGCAAAGATGTGCTGAGGACATGTCCATTTTGATCACCACCTATGAAGGGACACACAACCACACTCTTCCTCATTCAGCAACCGCCATGGCTTCCACAACCTCTGCAGCTGCTTCCATGCTGTTATCCGGTTCTTCAACCTCTTCAACCACCAACAACAACCTCCATGGCCTCAACTTTTATCTCTCATCAGACGGTTCCAAATCAAAGCAACTACACCACCTATCCAACCCTGCACTCTCATCATCTTCACATCATGACCATCCAACCATCACTCTTGACCTCACTACAAACCCAAACTCTTCCTCATCATCATCTCCCTTTGTTAGATTCAACAACCAACTCAGATACCCTTCTTCCACCAGCCTCAGCTTCAACTCCTCCGAGTCCAATGCAATGTCCTGGACCAATAACGGCTTCCTCAACTATGCTACTCATCAGCCGTACAACAACAACAACAACAGGAACATCCTCAGCTCTGTAAATTTTGGAAGACAACAAGCAGCAGAAAATATCTACCAATCCTACATGCAAAAGAACAACAACATCAATTCAATCCCTCCTTCTCAATCAGAAACTGTATCTGCAGCAACAAAAGCAATCACTGCACACCCCAATTTTCAGTCTGCATTGGCAGCAGCACTTACTTCATTCATTGGAAGCAGTAACACACCAGGAAATTTGGGTCACAAAATGACATGGGCAGAGCTGTTTCCAGCAGCGTCTAATTCTACTGCTACATTGCCTTCAACTTCTAAAGCTTCTGCATCAAACTTCTTCAACAAAACGCCTTCATCTTTGCCGTTTTCTACCCCCAAAAGCGCGTCTGCGTCTCCTGGTGATAGTAACGGCAACACAGATTAA 1722 0.4361 MDQFVSGRPEDGDCGVLKEEKKSENSVCDDQSSHKQDTVVEELPIANAEMSMVEAEPSASPSMKEDEVDDQLEITKAQMGEVREENQRLKMSLNKIMNEYRTLEMQFQDIAKQDQTKKNIVADDNNHQEIMEESDLVSLSLGRVPSNPRNIKVSKPLKDHEEFNEDLTLGLDCKLETSKSGSTNEAALPNPSPVNSCEVPKEEEAGETSPPTTKAPLKTMRDIEDEVAQQTHAKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAEDMSILITTYEGTHNHTLPHSATAMASTTSAAASMLLSGSSTSSTTNNNLHGLNFYLSSDGSKSKQLHHLSNPALSSSSHHDHPTITLDLTTNPNSSSSSSPFVRFNNQLRYPSSTSLSFNSSESNAMSWTNNGFLNYATHQPYNNNNNRNILSSVNFGRQQAAENIYQSYMQKNNNINSIPPSQSETVSAATKAITAHPNFQSALAAALTSFIGSSNTPGNLGHKMTWAELFPAASNSTATLPSTSKASASNFFNKTPSSLPFSTPKSASASPGDSNGNTD* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2169 573 SUPERFAMILY WRKY DNA-binding domain 242 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g2169 573 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 36 569 - -
Lja4g2169 573 MobiDBLite consensus disorder prediction 1 38 - -
Lja4g2169 573 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 36 569 IPR044810 GO:0003700
Lja4g2169 573 MobiDBLite consensus disorder prediction 531 573 - -
Lja4g2169 573 ProSiteProfiles WRKY domain profile. 244 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g2169 573 Gene3D WRKY domain 233 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g2169 573 Pfam WRKY DNA -binding domain 250 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g2169 573 MobiDBLite consensus disorder prediction 357 393 - -
Lja4g2169 573 SMART WRKY_cls 249 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g2169 573 Coils Coil 72 113 - -
Lja4g2169 573 MobiDBLite consensus disorder prediction 179 216 - -
Lja4g2169 573 MobiDBLite consensus disorder prediction 12 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2169 Lja-Chr4 23367900 23372203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2169 49 506 WRKY Transcription Factor Family AT1G18860 41.279 5.79e-81 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g2169 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2169 - - lja:Lj0g3v0067609.1 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5491 1 94054460 94058737 Lja4g2169 4 23367900 23372203 ECH
Lja1g2885 1 34823187 34832763 Lja4g2169 4 23367900 23372203 ECH
Lja2g1115 2 10576147 10578739 Lja4g2169 4 23367900 23372203 ECH
Lja4g2169 4 23367900 23372203 Lja4g2169 4 23367900 23372203 ECH
Lja2g1115 2 10576147 10578739 Lja4g2169 4 23367900 23372203 PCT