Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2164 ATGGGCAAATCACCAGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAATCAACCAGATCAAATATTTCAAAAGGAAGAGAGAAACTTGCTATTAGAAAAGAAGGAGTAGTTAACTCCAAGGTGTCAGAAACGGGTTTGGCTTTAGAGCCAACCTCCAATGCGATCACAAGTCATGAAGAAGACCTGGAGCTGGAGAACAAAGAAGTAGATAATATTTTACCTGGAAACCAAGAAATTGAATCTGTTCATCAAGATGCACCACTTGATCCAGAGAAAAAAAGGCAGGATGAAGCGGCTACGAAGGCACAGGCTGCCTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCTCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTAGTACATTATGCTGTATGTATGGAATTGTCAAGTTACAAGCACTTGCCCGTGGTGGCAGAGTTAGACAGTCTGAGGTTGGATTTGAAATTAATGAAAAGTGTAATGTTTTGAAGCCTCAGGATGGCCAGCTTGTCAATCCAATTGCTGTATCCACAGAAATTATGAAGCTATCAGCAAATACTTTCATCCGTAAGCTTCTTGCTTCATCAACTACTATAATGGCCCTGCGTTTGCAATATGTTGGTGGGGATCCAAATTCAGTTCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCACTTCTGGACACCAATTCCCCAACCTAAGAAAATTCGGGATGCTAAGCCTCAGAGGAAGCAGGGTGGTACTTCTGTGGGAGATGCTCAAATGAGCAAGTCAAAACGTACTCACAGAAAGCTTCCTACTGCGAATTTTGACTCGGTCCCAGTGCAAGCAAATCCTGAAGTTGAGAAACCAAAACGCAACATGAGGAAAGTTCCAAGCCAACCCTCGGATCCTGCGCAAGAAAATCCACAAAATGAGTCAGTCCCAGTGCAAGCAAATCCTGAAGTTGAGAAACCAAAACGCAACATGAGGAAAGTTCCAAGCCAACCCTCGGATCCTGCGCAAGAAAATCCACAAAATGAGTCAGTCCCAGTGCAAGCAAATCCTGAAGTTGAGAAACCAAAACGCAACATGAGGAAAGTTCCAAGCCAACCCTTGGATCCTGCGCAAGAAAATCCACAAAATGAGCTTGAAAAGGTTAAACGAAGCTTGAGAAAGGTTCATAACCCAGTTGTTGAGAATGCTGTTCAGTCAGAAGTTGAATCTGAGACTCCAAAGCTGCATTTGGAAAAGGAAACAGTTATCTCAGGTGTTGGTGTTTCAGAACATGGGGCCATTAGTTCAAATGAGAAAATCATGAATGAAGCAACATTAACCATTTCCAGTGTGCCAGATGTGGGAATTACTCCTAGACAGTCAGTTAGTAAGGAGGTTTCTGACACTCCTAGCAGTTATCAAGTGACGAAGGAATCAAAGCCCTTGACAGAGATTAAAAGCAAAGATATAAACATTTCTGATGATGAAATAAAGAATGCACCCATAGATTTACCGGATACAATGTCTAAAGATGAAAGTTCTCACTTAACAAATGGAGATCACAAGGAAGATCCTGCAGCAGGCAGTGAAAACCAGAAACCAACCCGAAAAGCCTCACCTGTAGCAAAGCAGGAACGTGCAGAGAATGGTTTACAGAACAGTCCAACAATACCGAGTTATATGGCTGCAACTGAATCTGCAAAGGCAAAGTTGAGGGCACAAGGATCCCCAAGAGTTGGACAAGATGGAAGTGAGAAAAACAACCAAACCCGGCGACATTCTCTGCCATCTTCAACTCACAGCAAAATCAGTTCGCATTCACCTAGGACACAGAGACCAATTCAAGCAGGTGGCAAAGGGGGGCCCAAGAGTGAGAAAACCGTATCAGCTTCTAGAGATGCAAATGGAAAGGTAGCTCAAGCAGAATGGAAGAGGTGA 1953 0.4337 MGKSPGKWIKTVLFGKKSTRSNISKGREKLAIRKEGVVNSKVSETGLALEPTSNAITSHEEDLELENKEVDNILPGNQEIESVHQDAPLDPEKKRQDEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVSTLCCMYGIVKLQALARGGRVRQSEVGFEINEKCNVLKPQDGQLVNPIAVSTEIMKLSANTFIRKLLASSTTIMALRLQYVGGDPNSVLSWLERWSASHFWTPIPQPKKIRDAKPQRKQGGTSVGDAQMSKSKRTHRKLPTANFDSVPVQANPEVEKPKRNMRKVPSQPSDPAQENPQNESVPVQANPEVEKPKRNMRKVPSQPSDPAQENPQNESVPVQANPEVEKPKRNMRKVPSQPLDPAQENPQNELEKVKRSLRKVHNPVVENAVQSEVESETPKLHLEKETVISGVGVSEHGAISSNEKIMNEATLTISSVPDVGITPRQSVSKEVSDTPSSYQVTKESKPLTEIKSKDINISDDEIKNAPIDLPDTMSKDESSHLTNGDHKEDPAAGSENQKPTRKASPVAKQERAENGLQNSPTIPSYMAATESAKAKLRAQGSPRVGQDGSEKNNQTRRHSLPSSTHSKISSHSPRTQRPIQAGGKGGPKSEKTVSASRDANGKVAQAEWKR* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2164 650 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Lja4g2164 650 Pfam IQ calmodulin-binding motif 120 137 IPR000048 GO:0005515
Lja4g2164 650 MobiDBLite consensus disorder prediction 585 617 - -
Lja4g2164 650 MobiDBLite consensus disorder prediction 244 397 - -
Lja4g2164 650 ProSiteProfiles IQ motif profile. 120 142 IPR000048 GO:0005515
Lja4g2164 650 PANTHER IQ-DOMAIN 5-RELATED 1 319 - -
Lja4g2164 650 PANTHER IQ-DOMAIN 5-RELATED 327 637 - -
Lja4g2164 650 SMART iq_5 118 139 IPR000048 GO:0005515
Lja4g2164 650 SMART iq_5 95 117 IPR000048 GO:0005515
Lja4g2164 650 MobiDBLite consensus disorder prediction 341 359 - -
Lja4g2164 650 PANTHER PROTEIN IQ-DOMAIN 31 1 319 - -
Lja4g2164 650 PANTHER PROTEIN IQ-DOMAIN 31 327 637 - -
Lja4g2164 650 MobiDBLite consensus disorder prediction 551 566 - -
Lja4g2164 650 MobiDBLite consensus disorder prediction 306 324 - -
Lja4g2164 650 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Lja4g2164 650 MobiDBLite consensus disorder prediction 486 506 - -
Lja4g2164 650 MobiDBLite consensus disorder prediction 513 535 - -
Lja4g2164 650 MobiDBLite consensus disorder prediction 459 650 - -
Lja4g2164 650 MobiDBLite consensus disorder prediction 459 485 - -
Lja4g2164 650 Pfam Protein of unknown function (DUF4005) 547 629 IPR025064 -
Lja4g2164 650 Gene3D - 93 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2164 Lja-Chr4 23297975 23305691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2164 1 650 IQD Protein Family AT1G18840 39.676 2.39e-109 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2164 - - lja:Lj0g3v0315489.1 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5494 1 94117053 94123760 Lja4g2164 4 23297975 23305691 ECH
Lja2g1119 2 10610632 10616802 Lja4g2164 4 23297975 23305691 ECH
Lja4g2164 4 23297975 23305691 Lja4g2164 4 23297975 23305691 ECH
Lja2g1119 2 10610632 10616802 Lja4g2164 4 23297975 23305691 PCT