Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2163 ATGGTAAATCCTCCTCCTGCACCTGCAAGCTTCTCGACTCAAGCAAACGCTCTTCTCAGAAAAAATCTAACATTCCAGAAACGGAACGTGAAGACCAACATTCGGTTGATTCTGTTTCCTCTGATCCTCTGCGTGTTGCTGGTTGTCCTCCAACGCTTAATCGACCGCCAATTTGATAAACCCCAGTACAAATGCGGCTGCGTCTGCCCCAACGGTAAAACTAACTGCCCTAGCTCCGAGAAGCTCTGTGGGGCCCAGTATTCCGATGCCGATCAATTCGTCTTCTGCCCGATTCCCAATCCGCCGGAATGGCCTCCCCTGCTGCAACTACCGTCGTTATGTAGAACTGGCTCAGACGCTCTTACTTTCCTCTTCACCGCCGATAACCGCTCATTTGCTCAAAGTGTGTCTGGAAATATGTTTCCAAGTGCCTTCACTGTAAATGAGTCTGATATCATGGCTAGTTTGGCCACAAATGTGATGGGATCAGAGGAATCACCGGACAGCACCAATTTTTTTGATTCTGCTTTCTCTTCGGGTCTTCCGATTTATTATCTATTGAGTCAGTGTTCTCAAGACATTGGATTCTCCTTTCCCTTCCAGCTGGCTGGCGTCACTGTGCAGCAAGAGTTCAAGTGCGGTCAAGGTTTAAATTTATGGCGTGATAGTTCTTCTGAGATCAACAATGAGCTGTATAAAGGTTATAAAAGGGGTAACCCGGAAAGAAATATCAATGGGATAGTTTCAGCTATTGATTTTCTAAATTCAAATGGGAATAGATTTAATGTCACCGTATGGTACAACTCAAGCTACAAGAGTGACACTGGATTTGGTCGTATTGATTTGATGCGTATTCCTCGTTCTGTAAATTTGATATCGAATGCCTACTTGCAGTTTCTGCTTGGACCCAGTGCCAATATATTATTTGAGTTTGTGAAGGAAATGCCAAAAGCTGAGACCCCACTTAGGCTAGAGATAGCTTCTCTTCTGGGCGGTCTGTTCTTTACATGGGTCGTCTTGCAACTTTTTCCTGTTGTTCTGACATCTCTGGTATATGAGAAGCAACAAAAACTAAGAATAATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATAATTTCGTATGGTTACTTTCTTGCAATATCAGTGATCTACATGTTTTGTTTTGTTACATTTGGCTCAGTTATAGGGTTGAAGTTCTTCACATTGAATGATTACAGCATCCAATTTGTGTTTTATTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGGCGGCTTCCTTTTTTTCAAATACTAATACTGCTACAGTGACTGGATATATAGGTGTCTTTGGAACTGGGCTTTTAGCTGGCTTCCTTTTCCAATATTTTGTTCAAAGTACATCATTTCCAAGAGGGTGGATCATTTTTATGGAGTTGTATCCTGGATTTGCTTTATATCGTGGGTTATATGAGTTTGCACAATTTTCCACGAATGGGAGTAATATGGGGACTGATGGTATGCGGTGGCGGGATCTAAGTGATGGCACCAATGGCATGAAAGAGGTCTTAATTATCATGTTGGCTGAGTGGGTAGTAGTGCTCTTTGCTGCTTATTACATCGATCAAGTATCGTCATCAGGAAGCGGAAAAGGTCCTCTTTTCTTCTTGAAAGGATTTCAAAGAAAACCTCCATCATTTCAGAAGCCTAGTGTCCAAATGCAGGGGTCTAAAGTTTTGACCCAGAATGAGAAACCTGATGTCATCCAAGAAATGGAAAAGGTGGAGCAGCTCCAACTTGAACCAACTATTAGTCATGCAATTGTATGTGATAACCTACAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGACAAAGTTGCAGTGAGAGGGTTGTTTCTTGCTGTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTTACAAAGCCAACCTCTGGTACGGCATCTGTTCACGGCCTTGACATAAGAACTCATATGGAAGGAATATATACTAGCATGGGGGTATGCCCACAGCATGACTTACTTTGGGAAAGCTTGACAGGCAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGTTTGGTCTTGACACAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAACAAGCTGGCAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTCGCAATTTCATTGATTGGGGATCCCAGAGTTGTTTATATGGATGAGCCAAGTACCGGGTTAGACCCTGCTTCAAGGAAAAGCTTATGGAATGTTGTTAAGCTTGCAAAACGGGACCGTGCGATCATCCTGACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGGTTAGGAATTTTTGTAAATGGTAGCTTGCAGTGTGTAGGAAATGCAAAGGAGCTGAAAGGCAGATACGGAGGAACTTATGTGTTCACGATGACAACATCTTCAGATCATGAGAGGGAAGTGGAGAGCCTGGTGATGAAGCTCACCCCAAATGCCAACAAGATATACCATCTCTCTGGTACCCAGAAGTTTGAGCTGCCAAAAGAGGAGGTTAGAATTGCTGATGTATTCCGAGCAGTGGAAGCTGCAAAGAAGAACTTCACTGTTTCTGCATGGGGTTTAGCTGACACCACATTGGAAGATGTTTTCATCAAGGTTGCACGTGAGGCTCAGGCATTTGATACCCTGTCTTAA 2784 0.4307 MVNPPPAPASFSTQANALLRKNLTFQKRNVKTNIRLILFPLILCVLLVVLQRLIDRQFDKPQYKCGCVCPNGKTNCPSSEKLCGAQYSDADQFVFCPIPNPPEWPPLLQLPSLCRTGSDALTFLFTADNRSFAQSVSGNMFPSAFTVNESDIMASLATNVMGSEESPDSTNFFDSAFSSGLPIYYLLSQCSQDIGFSFPFQLAGVTVQQEFKCGQGLNLWRDSSSEINNELYKGYKRGNPERNINGIVSAIDFLNSNGNRFNVTVWYNSSYKSDTGFGRIDLMRIPRSVNLISNAYLQFLLGPSANILFEFVKEMPKAETPLRLEIASLLGGLFFTWVVLQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWIISYGYFLAISVIYMFCFVTFGSVIGLKFFTLNDYSIQFVFYFIYINLQISLAFLAASFFSNTNTATVTGYIGVFGTGLLAGFLFQYFVQSTSFPRGWIIFMELYPGFALYRGLYEFAQFSTNGSNMGTDGMRWRDLSDGTNGMKEVLIIMLAEWVVVLFAAYYIDQVSSSGSGKGPLFFLKGFQRKPPSFQKPSVQMQGSKVLTQNEKPDVIQEMEKVEQLQLEPTISHAIVCDNLQKVYPGRDGNPDKVAVRGLFLAVPQGECFGMLGPNGAGKTSFISMMIGLTKPTSGTASVHGLDIRTHMEGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGLVLTQAVEESLKSLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRKSLWNVVKLAKRDRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKGRYGGTYVFTMTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVSAWGLADTTLEDVFIKVAREAQAFDTLS* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2163 927 Pfam ABC-2 family transporter protein 245 537 - -
Lja4g2163 927 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524
Lja4g2163 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 833 IPR027417 -
Lja4g2163 927 CDD ABC_subfamily_A 609 830 - -
Lja4g2163 927 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 605 842 IPR003439 GO:0005524
Lja4g2163 927 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 9 927 - -
Lja4g2163 927 Gene3D - 593 867 IPR027417 -
Lja4g2163 927 Pfam ABC transporter 631 771 IPR003439 GO:0005524
Lja4g2163 927 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 9 927 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja4g2163 927 SMART AAA_5 635 819 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2163 Lja-Chr4 23280676 23290258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2163 580 848 Calmodulin-binding Proteins AT2G36910 23.050 7.10e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2163 - - gmx:100792897 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2163 4 23280676 23290258 Lja4g2163 4 23280676 23290258 ECH