Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2162 ATGGCAAATCCAGCTCCGGCTCCGGCGAGCTTCTGGACTCAGACCAACGCTCTTTTCAGGAAGAATCTTACCTTCCAGAAACGGAACGTGAAGACCAACATTCGTCTCATTCTGTTCCCTATGCTCCTTTGTGTTTTGCTGGTTATCCTCCAACATGTAATCGACCGCCAATTTGATAAGCCCAAGTACCAATGCGGCTGCGTCTGCGCCAACAACCAAACTAACTGCCCTGACTCCGAGAAGCTCTGTGGGACCCAATATTCCGATGCCAATCAGTTCGCCACCTGCGCCATTCCTAGTCCACCGGAGTGGCCTCCATTGTTGCAGCTCCCGGCTCTGCCGGACCGGGCCGCGACAGAGCCGGCATGCAGAAGAACTGACTCGTGCCCTCTTACCTTTCTCTTCACCGCCGATAACCACTCATTTGCTCAAAGTGTATCTGGAAATATGTTCCCGAGTGCATTAGCTGTAAATAGGTCTGATATCATGGCTAGTTTGGCCACAAATGTTATGGGATCAGATGCATTACCGGGCTACACCAATTTTCTTGAATCTGCTTTCGTTTTGGGTCTTCCTGTTTATTATCTATTGAGTCAGTGCTCTCAAGACATTGGATTCTCCGTTCCCTTCCAGGTGGCTGGCATCAGTGTGCAGCAAGAGTTCAAGTGCGGTCGAGGTTTAAGTTTATGGCGCAATAGTTCTTCTGAGATCAACAATGAGCTGTATAAAGGTTATCAAAGGGGTAACCCGGAAAGAAATACCAATGGGATAGTTTCAGCTATTGATTTTCTAAATTCAAATGAGACTAGATTTAATGTCACCATATGGTACAACTCAACCTACAAGACTGACGAAGGCTTTTATCGTATTAATTTGATGCGAATTCCTCGTTCTATAAATCTGATATCGAATGCCTACCTGCAGTTTATTCTTGGACCCAGTGCCAATATATTATTTGAATTTGTAAAGGAAATGCCAAAATCTGAGACCCCATATAGGCTAGAGATAGCTTCTCTTATGGGCGGTCTGTTCGTTACATGGGTCATCCTGCAACTTTTTCCTGTTGTTCTGACATCTCTGGTATATGAGAAGCAACAAAAACTAAGAATAATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGTTAATTTCGTATGGTTATTTTCTTGCTATATCAGTTGCCTACATGTTTTGTTTTGTTATATTTGGCTCAGTCATAGGGTTGAAGTTCTTTACATTGAATGACTACAGCATCCAATTTGTGTTCTATTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGGCGGCTTCTATATTTTCAAATGCTAATACTGCTACAGTAACTGGATATATAGGTATCTTTGGAACCGGGCTTTTAGCTGCCTTTCTTTTCCAATTTTTTCTTCAAAGTACATCATTTCCAAGAAGGTGGATCCTTCTAATGGAGCTATATCCTGGATTTGCTTTATATCGCGGGTTATATGAGTTTGCACAATTTTCCAAGATTGGGTGTGATATGGGGACTAATGGTATGCGGTGGCGGGATCTAAGTGATAGCACTAATGGGATGAAAGAGGTCTTAATCATCATATTGGCTGAGTGGGTAGTAGTGCTTTTTGCAGCTTATTACATCGATCATGTATTGTCATCAGGAAGTGGAAAAGGTCCTCTTTTCTTCTTGAAAGGATTTCAAAGAAAACCACCTTCGTCATTTCGAAAGCCCAGTGTCCAAATGCAGGGGTCAAAAGTTTCGGCCCAGAATGAGAAACCTGATATCATCCAAGAAATGGAAAAGGTGGAGCAGGTCCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACAACCTACAAAAATTCTATCCAGGGAGGGATGGAAATCCTGACAAATTTGCAGTAAAAGGGTTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGTCTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAACCTCTGGTACGGCATCTGTTCACGGCCTTGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGGGTATGCCCACAGCATGACTTACTTTGGGAAAACTTGACAGGCAGAGAGCACCTACTTTTTTATGGCCGACTTAAAAATCTTAAAGGTTTGGTCTTGACACAAGCAGTAGAAGAATCTTTAAAGAGTTTAAACCTTTTCCATGGAGGAATTGCTGATAAACAGGCTGGCAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTCGCAATTGCATTGATTGGGGATCCCAGAGTTGTTTATATGGATGAGCCAAGTACCGGGTTAGACCCTGCTTCAAGGAAAAGCTTATGGAATGTTGTTAAGCTTGCAAAACGGGACCGTGCAATCATTCTGACCACACATTCCATGGAAGAGGCAGAAGCCTTATGTGATCGATTAGGAATTTTTGTAAATGGTAGCTTGCAGTGCGTAGGAAATGCAAAGGAGCTGAAAGGCAGATACGGAGGAACTTATGTCTTCACGATGACAACATCTTCCGATCACGAGAGGGAAGTGGAGAACCTGGTGATGAAGCTCACCCCAAATGCCAACAAGATATACCATCTCTCTGGTACCCAGAAGTTTGAGCTGCCAAAAGAGGAGGTTAGAATAGCTGATGTATTCCGAGCAGTGGAAGCTGCAAAGAAGAACTTCACTGTTTCTGCATGGGGTTTAGCTGACACCACATTGGAAGATGTTTTCATCAAGGTTGCACATGAGGCTCAGGCATTTGATACCTTGTCTTAA 2817 0.4313 MANPAPAPASFWTQTNALFRKNLTFQKRNVKTNIRLILFPMLLCVLLVILQHVIDRQFDKPKYQCGCVCANNQTNCPDSEKLCGTQYSDANQFATCAIPSPPEWPPLLQLPALPDRAATEPACRRTDSCPLTFLFTADNHSFAQSVSGNMFPSALAVNRSDIMASLATNVMGSDALPGYTNFLESAFVLGLPVYYLLSQCSQDIGFSVPFQVAGISVQQEFKCGRGLSLWRNSSSEINNELYKGYQRGNPERNTNGIVSAIDFLNSNETRFNVTIWYNSTYKTDEGFYRINLMRIPRSINLISNAYLQFILGPSANILFEFVKEMPKSETPYRLEIASLMGGLFVTWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWLISYGYFLAISVAYMFCFVIFGSVIGLKFFTLNDYSIQFVFYFIYINLQISLAFLAASIFSNANTATVTGYIGIFGTGLLAAFLFQFFLQSTSFPRRWILLMELYPGFALYRGLYEFAQFSKIGCDMGTNGMRWRDLSDSTNGMKEVLIIILAEWVVVLFAAYYIDHVLSSGSGKGPLFFLKGFQRKPPSSFRKPSVQMQGSKVSAQNEKPDIIQEMEKVEQVLLEPTINHAIVCDNLQKFYPGRDGNPDKFAVKGLFLAVPRGECFGMLGPNGAGKSSFISMMIGLTKPTSGTASVHGLDIRTHMDGIYTSMGVCPQHDLLWENLTGREHLLFYGRLKNLKGLVLTQAVEESLKSLNLFHGGIADKQAGKYSGGMKRRLSVAIALIGDPRVVYMDEPSTGLDPASRKSLWNVVKLAKRDRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKGRYGGTYVFTMTTSSDHEREVENLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVSAWGLADTTLEDVFIKVAHEAQAFDTLS* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2162 938 SMART AAA_5 646 830 IPR003593 -
Lja4g2162 938 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 8 938 - -
Lja4g2162 938 Pfam ABC-2 family transporter protein 262 546 - -
Lja4g2162 938 Gene3D - 608 878 IPR027417 -
Lja4g2162 938 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 938 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja4g2162 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 844 IPR027417 -
Lja4g2162 938 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524
Lja4g2162 938 Pfam ABC transporter 639 782 IPR003439 GO:0005524
Lja4g2162 938 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 616 853 IPR003439 GO:0005524
Lja4g2162 938 CDD ABC_subfamily_A 620 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2162 Lja-Chr4 23270573 23278632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2162 591 864 Calmodulin-binding Proteins AT2G36910 24.042 2.24e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2162 - - gmx:100792897 1410.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2162 4 23270573 23278632 Lja4g2162 4 23270573 23278632 ECH