Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2160 ATGGGAAATTGTTTTGGAGCACGTTCCAAGGTTGATGATAAACTTCTGAGTTTCCAACCCAATGCTACAAAAGTTCCTCATAGAAGCACCCAGTTGTTAGCTCATACAGGTCCGACGGCGCATGGATACAGTAAAGGAGGTAAACCTGAGATTCTCCCCACTCCAAGATCTGAAGGAGACATACTTTCGTCCCCACACTTAACAGCCTTCACATTCAAGGATCTTAAGAATGCCACTAAAAATTTTAGTCTTGATAGTCTAATTGGAGAAGGGGGATTTGGACATGTCTATAAGGGGTGGATTGATGGTCAATTCCTTGGGGCTACATGGCCTAGATCTGGAATGGTTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAAGAATGGCTGTCTGAACTCAATTATCTTGGCCAACTTGATCATCCGAATCTTGTCAAACTTATTGGATACTGCCTGGATGGAGATAACCGACTTCTAGTTTATGAGTACATGCCCAATGAATGCTTGGAAAATCATCTGTTTCGCAAGGAAAAACTACTTCCTTGGGCAACAAGAATCAAAGTTGTTGTTGGTGCTGCTCGAGGTCTCACCTTCCTACATGACTCTGATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGATTCGGAATTTAACGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGACCCACTGGTGATCGTTCTCATGTTTCCACTCAAGTCCTGGGCACGCAAGGCTATGCTGCCCCTGAATATATTGCTACAGGTCGGCTGACCACGAGGTGTGATGTCTATAGCTTTGGGGTTGTGTTGTTGGAACTACTCTCTGGGCGCCATGCTGTTGACATAACAACATCTGGAGTAGAACGTAATCTAGTTGATTGGGCAAGACCCTATTTGGATAATAGGAGGAAGTTGTTCCGGATCATGGACACCAAGTTAGAAGGACAGTACTCTCAGAGGCAAGCTTGTGTAATTTCAAGCCTTGCATTACAATGTATTAGTGAGGCCAAGATTAGACCACAGATGTCTGAGGTTTTGGCTACCTTGGAGCACCTTCCAGTCATGAGACATTCACGTAACCCGTCTAGAGCAGAGGAAAAGTCCACAAGTCCCATAAGAGAAGGGATCTGA 1164 0.4399 MGNCFGARSKVDDKLLSFQPNATKVPHRSTQLLAHTGPTAHGYSKGGKPEILPTPRSEGDILSSPHLTAFTFKDLKNATKNFSLDSLIGEGGFGHVYKGWIDGQFLGATWPRSGMVVAVKKLKPEGFQGHKEWLSELNYLGQLDHPNLVKLIGYCLDGDNRLLVYEYMPNECLENHLFRKEKLLPWATRIKVVVGAARGLTFLHDSDQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRHAVDITTSGVERNLVDWARPYLDNRRKLFRIMDTKLEGQYSQRQACVISSLALQCISEAKIRPQMSEVLATLEHLPVMRHSRNPSRAEEKSTSPIREGI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2160 387 PANTHER BNAC02G17010D PROTEIN 27 377 - -
Lja4g2160 387 PANTHER OS01G0588500 PROTEIN-RELATED 27 377 - -
Lja4g2160 387 CDD STKc_IRAK 88 363 - -
Lja4g2160 387 Pfam Protein tyrosine and serine/threonine kinase 84 319 IPR001245 GO:0004672|GO:0006468
Lja4g2160 387 ProSiteProfiles Protein kinase domain profile. 82 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2160 387 Gene3D Phosphorylase Kinase; domain 1 54 167 - -
Lja4g2160 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Lja4g2160 387 ProSitePatterns Protein kinases ATP-binding region signature. 88 121 IPR017441 GO:0005524
Lja4g2160 387 Gene3D Transferase(Phosphotransferase) domain 1 168 381 - -
Lja4g2160 387 SUPERFAMILY Protein kinase-like (PK-like) 60 361 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2160 Lja-Chr4 23201069 23204246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2160 70 363 Glycoside Hydrolase AT3G07070 51.827 2.51e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g2160 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2160 - - gmx:100791844 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5502 1 94489408 94493756 Lja4g2160 4 23201069 23204246 ECH
Lja4g2160 4 23201069 23204246 Lja4g2160 4 23201069 23204246 ECH
Lja2g1121 2 10670810 10674545 Lja4g2160 4 23201069 23204246 PCT