Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2154 ATGGACGGAGGTGATGATTTCCACCACCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAAGACCAAGAACCCGCCGCCTCGTGCTCCACCTCCTCCCCATACCCTTCCCTAGCAATCTCTGCAGAACAACCCAGCACGTCCAATTCAACCCGATCCAATAACCAGCAGCTGGTACCGGCACCGGAGGATCCAGCTCAGGGGAAAAAACCTCCGCCGAAGCGGACCTCCACCAAGGACCGCCACACCAAGGTGGAGGGCCGCGGCAGGCGTATCCGAATGCCGGCCCTCTGCGCCGCTAGAGTTTTCCAACTCACCCGCGAGCTCGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCTGAGCCCGCCGTCATCGCCGCCACCGGAACGGGAACAATCCCGGCGAACTTCACCTCGCTCAACATCTCGCTCCGTAGCTCTGGCTCCTCCATGTCGGTTCCTTCCCAGCTCAGATCCTCGTACTTCAACCCGAACTTCTCCGTCCAGCAACGGCGGAGCATGTTCCCCGGGATCGGACTTTCCTCCGACAACTCCGGCGTCGGGACAACGCTGCTGAATTTCCAATCCGGCAACCTCGCCGCCGGGATGCTGCAGCAGGCAAAGCAGGAGCAGCAGCTCCGCGACGGCGGCGGCGGCGCGCCGTCGTCGTCGACCATTGACTTATCAGAAACAACTACAGAAGAAAGCCTCGGAAGGAAGAGAAGACCATCGGAACATCACCATGACCAGATGGGAAGCTATCTCCTCCAGTCAAGTGCAGGCGCGATTCCGGCTAGTCAGATTCCGGCGAACATATGGATGGTGCAGGCGAATTCCAATAACCAAGTCATGGGTATCGGCGGCGGTGGTGGTGGTGGTGGCGGCGGAGGTAGTGGTAATGACCCTGTTTGGACTTTTCCACCGATGAACAACAGTGCTTTATACAGAGGAACCATGTCAAGTGGGTTACATTTCATGAATTTTCCAACACCCATGGCCTTGTTACCGGGTCAGCAACAACAACAAATGGGTAGTGGAAACAACAACATGAATCATCATGAAGGGCATTTGAACATGCTTGCAGGGTTAAGTGCTTATAATCGTTCTGTTTCTGAGTCTCAGCAACAACAACAACCAAGTGGGTCTCAACAGTCACACCGTGGTGGAAGCCATGATGAACGCCATGATAACAGCACCAGCCACCACTCTTAG 1239 0.565 MDGGDDFHHHHHRQNFPFQLLEKKEDQEPAASCSTSSPYPSLAISAEQPSTSNSTRSNNQQLVPAPEDPAQGKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSVQQRRSMFPGIGLSSDNSGVGTTLLNFQSGNLAAGMLQQAKQEQQLRDGGGGAPSSSTIDLSETTTEESLGRKRRPSEHHHDQMGSYLLQSSAGAIPASQIPANIWMVQANSNNQVMGIGGGGGGGGGGGSGNDPVWTFPPMNNSALYRGTMSSGLHFMNFPTPMALLPGQQQQQMGSGNNNMNHHEGHLNMLAGLSAYNRSVSESQQQQQPSGSQQSHRGGSHDERHDNSTSHHS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2154 412 MobiDBLite consensus disorder prediction 215 259 - -
Lja4g2154 412 MobiDBLite consensus disorder prediction 242 258 - -
Lja4g2154 412 Pfam TCP family transcription factor 80 254 IPR017887 -
Lja4g2154 412 MobiDBLite consensus disorder prediction 30 65 - -
Lja4g2154 412 MobiDBLite consensus disorder prediction 373 412 - -
Lja4g2154 412 MobiDBLite consensus disorder prediction 215 241 - -
Lja4g2154 412 MobiDBLite consensus disorder prediction 396 412 - -
Lja4g2154 412 MobiDBLite consensus disorder prediction 1 95 - -
Lja4g2154 412 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 8 411 - -
Lja4g2154 412 MobiDBLite consensus disorder prediction 72 95 - -
Lja4g2154 412 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 411 IPR005333 GO:0003700
Lja4g2154 412 MobiDBLite consensus disorder prediction 373 395 - -
Lja4g2154 412 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Lja4g2154 412 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2154 Lja-Chr4 23110891 23112945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2154 73 384 TCP Transcription Factor Family AT3G47620 47.028 3.84e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja4g2154 TCP 5.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2154 - - pvu:PHAVU_003G190900g 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5511 1 94899222 94900886 Lja4g2154 4 23110891 23112945 ECH
Lja4g2154 4 23110891 23112945 Lja4g2154 4 23110891 23112945 ECH