Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2153 ATGGGTTCAGAGAGTCTGGGTCCGGTGGTTGAGACATCAGAAAACAGGTCTTCTGGTAAAATGAACCAAGGGAAAGCCCCCAGGAGAGTTCACAAGGCTGAACGGGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATACACTTGATCTAAATGAGCAGAACAATGGAAAGGCTTCTATATTGTGTGAAGCTTCTAGGCTGCTAAAGGACTTGCTCTGTCAGATTGAGTCCCTCAAGAAGGAGAACGTATCTCTGTTGTCTGAATCTAATTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCTTAGAAACCCAAATTGAGAAACTTCAAGGTGAGATTCAAGCAAGAGTTGCACAGTCTAAACCAGACCTGAATGCACCTCCTCATTTGGAACTTGAGCCACCAGAGCAGACAAATTTTCCTGGACAATCTATCCAAGTGCCTACCATGGAACCTACCTTGCCGCAAGGACCTGCGGTTTTGGTTGTTCCCTTTCGCCCCGATCTTCAAACTGCTTTTCCGGTTCCTAATATATCTGAGCTCATGCCAAAACCTGCACCTGTTGTCAGCAAACCTCATGCCAGGTATCCTACACCGGCAGATTCATGGCCCTCAAAGCTGCTTGGAGAGCAACCAACTTCAAACTAA 678 0.4543 MGSESLGPVVETSENRSSGKMNQGKAPRRVHKAEREKMKREHLNELFLDLANTLDLNEQNNGKASILCEASRLLKDLLCQIESLKKENVSLLSESNYVTMEKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNAPPHLELEPPEQTNFPGQSIQVPTMEPTLPQGPAVLVVPFRPDLQTAFPVPNISELMPKPAPVVSKPHARYPTPADSWPSKLLGEQPTSN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2153 225 PANTHER TRANSCRIPTION FACTOR BHLH47 10 224 - -
Lja4g2153 225 Gene3D - 24 102 IPR036638 GO:0046983
Lja4g2153 225 PANTHER TRANSCRIPTION FACTOR BHLH47 10 224 - -
Lja4g2153 225 MobiDBLite consensus disorder prediction 1 36 - -
Lja4g2153 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 77 IPR011598 GO:0046983
Lja4g2153 225 MobiDBLite consensus disorder prediction 187 225 - -
Lja4g2153 225 Coils Coil 102 122 - -
Lja4g2153 225 Coils Coil 74 94 - -
Lja4g2153 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 91 IPR036638 GO:0046983
Lja4g2153 225 MobiDBLite consensus disorder prediction 1 22 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2153 20 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 53.636 4.15e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2153 - - mtr:MTR_4g108360 361.303