Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2150 ATGGTTCACGTCTCCTTCTACAGAAACTATGGGAAAACCTTCAAGAAGCCTCGTCGCCCCTACGAGAAGGAGCGTTTGGATGCAGAGCTGAAGCTCGTCGGAGAGTACGGGCTCCGCTGCAAGAGGGAGCTCTGGAGGGTGCAGTACGCTCTCAGCCGCATCCGCAACAATGCTAGGAACCTGCTGACGCTTGACGAGAAGAACCCTCGCCGGATCTTCGAGGGTGAGGCTCTTCTCAGGAGGATGTTCCGTTATGGGCTTCTTGATGAGACCCAGAACAAGCTTGATTATGTGCTCGCTCTTACTGTTGAGAACTTTCTCGAGCGCCGCCTGCAAACCCTGGTTTTCAAGTCTGGTATGGCTAAGTCTATTCATCATGCTAGGGTTCTCATCAGGCAGAGGCACATCAGGGTTGGGAGGCAGGTTGTGAACATCCCATCATTCATGGTGAGGATGGATTCACAGAAACACATTGACTTTTCACTCACAAGTCCTCTTGGTGGTGGTCGCCCAGGACGTGTGAAGCGAAAGAACATGAAGGCTGCTGCCAAGAAGGCTGCTGGTGGCGACGGTGATGAGGAGGATGAAGATTAA 594 0.5269 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRMDSQKHIDFSLTSPLGGGRPGRVKRKNMKAAAKKAAGGDGDEEDED* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2150 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Lja4g2150 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Lja4g2150 197 Gene3D - 108 165 IPR036986 GO:0003723
Lja4g2150 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 197 IPR022801 -
Lja4g2150 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Lja4g2150 197 TIGRFAM uS4_arch: ribosomal protein uS4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Lja4g2150 197 MobiDBLite consensus disorder prediction 162 197 - -
Lja4g2150 197 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 5 197 - -
Lja4g2150 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Lja4g2150 197 SMART s4_6 109 180 IPR002942 GO:0003723
Lja4g2150 197 Pfam S4 domain 109 151 IPR002942 GO:0003723
Lja4g2150 197 CDD S4 109 151 - -
Lja4g2150 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2150 Lja-Chr4 23065238 23067091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2150 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.909 9.57e-126 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2150 K02997 - gmx:100305663 356.681