Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2149 ATGAAAAAGAAGCAGGTGGTGGTGAATCATGCAGCTTACAGTGGAGGGTATGCTGTGGATGGGTGCAGGGAGTTCATGGCGAGCGCAGGGGAAGGTACAGAGGGAGCGCTTACATGTGCTGCTTGCGGCTGCCATCGTAACTTCCATAAGAGGGAACTAACGTTTAATTCTACCTTGAAAACTAAGATGATATGA 195 0.4872 MKKKQVVVNHAAYSGGYAVDGCREFMASAGEGTEGALTCAACGCHRNFHKRELTFNSTLKTKMI* 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2149 64 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 3 52 IPR006456 -
Lja4g2149 64 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 8 52 IPR006456 -
Lja4g2149 64 PANTHER MINI ZINC FINGER PROTEIN 3 8 54 - -
Lja4g2149 64 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 54 - -
Lja4g2149 64 Pfam ZF-HD protein dimerisation region 7 53 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2149 Lja-Chr4 23035610 23036735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2149 9 53 Zinc finger-homeobox gene family AT3G28917 80.435 3.44e-21 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja4g2149 ZF-HD_dimer 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2149 - - gmx:100797273 92.8189