Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2146 ATGATTCATGATCATTCATTCACTATAACCAAAACCATCATCATGTATTCATTCATATTCCATATATATAGCCAATTTTCTGGAAATGGTAGTGCTAGTTACCCTGCACTGGATTGGTCTGATGAGTTCCCCATATATGATAGCCATTTTGATGCAGCCCCTTATAATGTGGAGTGTTACCCTGTAGATCCATTATATGAAACTCTCTCCATTGAACCAACACCTTTAACTGTCCAAGACTATGATTTTTATGAAGTTAAGGAAGGTTTCTCTGTCTGGAATGAAATTGATGCTGGGTTTGAATCAGAGAAGGCTTTACTCTATTGCACCAATGAAGAGAGTGGGAAGGAATTGATGGGAAATGTGAAGGCTAAGAGAGGCAGAGAAGTGAGAAGTAGCAGCACTAGAATGTTGTCAAGGACAACTTTATCACTATACTTTTACATGCCAATAACAGAAGCAGCAAGGGAGCTAAATGTTGGTCTCACACTTTTGAAGAAAAGATGCAGGGAATTGGGGATCAGAAGGTGGCCCCACAGGAAGCTGATGAGCCTGCAAACACTGATCAAGAATGTTCAGGAGCTAGGGAAAGAGGGGAACGAGGGAGAAGAAAAGTTGAGGAATGCAATTGAGATATTGGAAAAGGAGAAGAAGCTTGTGGAGGAAATGCCTGATAAGGATCTGGAGAGTAACACAAAGAGGCTTAGGCAAGCTTGTTTTAAGGCAAATTACAAGAAGAGGAGGCTCATGGAGATGGAGAAGATGGATCCAAAGTACTCTTCTTTTTACAGTGGTCCTGTTAGTGTTAGTATTACTAGCAGTTATGCAACAAGTGAGTGTTGTTATGATGATGAAAAGGAACATGACATCAAGGGTGATTTGCGTAGCAAGCTTCCATTCTAG 903 0.4064 MIHDHSFTITKTIIMYSFIFHIYSQFSGNGSASYPALDWSDEFPIYDSHFDAAPYNVECYPVDPLYETLSIEPTPLTVQDYDFYEVKEGFSVWNEIDAGFESEKALLYCTNEESGKELMGNVKAKRGREVRSSSTRMLSRTTLSLYFYMPITEAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELGKEGNEGEEKLRNAIEILEKEKKLVEEMPDKDLESNTKRLRQACFKANYKKRRLMEMEKMDPKYSSFYSGPVSVSITSSYATSECCYDDEKEHDIKGDLRSKLPF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2146 300 ProSiteProfiles RWP-RK domain profile. 122 206 IPR003035 -
Lja4g2146 300 Coils Coil 203 223 - -
Lja4g2146 300 PANTHER PROTEIN RKD1-RELATED 37 261 - -
Lja4g2146 300 Pfam RWP-RK domain 138 185 IPR003035 -
Lja4g2146 300 PANTHER PROTEIN RKD4 37 261 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2146 Lja-Chr4 23005411 23006786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2146 133 248 AtRKD Transcription Factor Family AT1G18790 72.650 1.78e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja4g2146 RWP-RK 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2146 - - gmx:100788666 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2146 4 23005411 23006786 Lja4g2146 4 23005411 23006786 ECH
Lja4g2146 4 23005411 23006786 Lja1g5527 1 95416417 95418040 PCT