Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja4g2139 | ATGGGGAGAGTTAAACTGAAGATAAAGAAATTAGAGAGCACTAGCAACCGGCATGTGACTTATTCCAAGAGGAAGAGTGGAATTTTGAAGAAAGCAAAGGAATTATCAATACTATGTGATGTAGATATTATCCTTCTCATGTTTTCTCCAACAGGAAAGCCCACATTGCTGCATGGAGAGCGCAGCAATATTGAGGAGGTCATTGCAAAATTTGCTCAACTTAGCCCGCAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGACGTAAAAATACAAGATTTCTTGGGTTCAAGCAGCCAAACAGTGGAGGATTTAAGTCATCATGTGAGGGTTTTACAATCTCAGCTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTGGAGAAGATCAATCACTTGGAACATCTTAGGCAAATGGAAGAGTCACTCAGGGAATCTATCAATCGAGTGTGTATACAAAAGGAAAATTTGGGAAAGCAGCAACTAATTTCACTTGATTGTGCTAACCAGGTATTGCCAGAAGGGATGACTTTACCCTTGATGATGGCTGGGCTGCAAGAATCTCAACCCCTGTCTTGGCTTTTGAATAGCGATAATCATCAGTTGATGTTACCCAGCGAACCGAAATATCTGCCATATAGAGAAGCTGAGTGCTCCACTGATATTTCACTCCCAGGCTACTCTGGTTATGTTGGGGGTACCAAACTTGAGGTTGGTGGCTCTCCCCATGTCACTACCTTGGGTCAGGGAGGTGGTGGTGGCTTCAATCAGTTAAATGGAACTGACTACTTAAACGTACAACGTTGCGAGCAGTTTTCATGCCCTCCACAAGATATTGAGGAAGTGAAACATCATCAAACGATGAACAGTAAACCAAACACTCTGGATTATGAAGTCAATAACAACCTTGATCTGCCCAGGTCACTGTTTGAAAATGGACACCAGTTTTGGAATCCTGCTTCTGGGTCTTGTGGAATTGCCATGTATAATGAGAATGGCTACCACAGGGTAAGCAATTGTTTTATCTTTCATCAGTGA | 1080 | 0.4213 | MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDVDIILLMFSPTGKPTLLHGERSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEDLSHHVRVLQSQLTEVHQRLSYWNNLEKINHLEHLRQMEESLRESINRVCIQKENLGKQQLISLDCANQVLPEGMTLPLMMAGLQESQPLSWLLNSDNHQLMLPSEPKYLPYREAECSTDISLPGYSGYVGGTKLEVGGSPHVTTLGQGGGGGFNQLNGTDYLNVQRCEQFSCPPQDIEEVKHHQTMNSKPNTLDYEVNNNLDLPRSLFENGHQFWNPASGSCGIAMYNENGYHRVSNCFIFHQ* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja4g2139 | 359 | Coils | Coil | 77 | 97 | - | - | |
| Lja4g2139 | 359 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 351 | - | - | |
| Lja4g2139 | 359 | Gene3D | - | 14 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
| Lja4g2139 | 359 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g2139 | 359 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g2139 | 359 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g2139 | 359 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g2139 | 359 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 55 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g2139 | 359 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g2139 | 359 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
| Lja4g2139 | 359 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 | 1 | 351 | - | - | |
| Lja4g2139 | 359 | CDD | MADS_SRF_like | 2 | 84 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja4g2139 | Lja-Chr4 | 22954592 | 22958159 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja4g2139 | 1 | 263 | Type I MADS-box Gene Family | AT2G03060 | 52.768 | 1.73e-89 | 272 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MADS-M-type | Lja4g2139 | SRF-TF | 6.4e-20 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja4g2139 | - | - | pvu:PHAVU_003G189100g | 575.859 |
Event-related genes