Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2138 ATGGGGTTTCTGGGCCTTCTCTTGGTGGGGATTCTCTGTGTGGGATCAGGTGCTTATGCAGCTAGTGATGGTTGGATGGATGCTCATGCAACCTTCTATGGTGGGGGAGATGCCTCAGGCACAATGGGTGGAGCTTGTGGATATGGAAACCTGTATAGTGAGGGCTATGGGACTGAGACTGCTGCTCTGAGCACAGCCTTGTTCAACAATGGTTTAAGCTGTGGGGCTTGCTATGAAATCAAGTGTGTCAGTCACCAGAAATGGTGCCTTACAGGCTCAATTATGGTCACTGCCACCAATTTCTGCCCACCAAACAATGCCCTCCCAAATGATGCGGGTGGCTGGTGCAACCCTCCCCTTCAACACTTTGATCTCTCTCAACCGGCCTTCCAACAAATTGCTCAATACAAAGCTGGCATAGTACCTGTAGCTTACAGAAGGGTTCCATGCCAAAAGAAAGGAGGCATCAGTTTCACCATCAATGGTCATTCTTACTTCAACCTAGTCTTGATCACGAACGTTGGTGGCTCCGGAGATGTTCAAGCAGTTTCCATCAAAGGTTCAAGAACTGATTGGCAACCAATGTCCAGGAACTGGGGTCAGAACTGGCAGAGCAATGCTAACCTCAACGGACAAAGCCTGTCCTTTAAGGTCACCACCAGCGATGGCCGCACCTTGGTTTCAAACGATGTTGTCCCTGATAACTGGTCTTTTGGCCAGACTTTCACAGGGCAACAATTCCCTTGA 747 0.494 MGFLGLLLVGILCVGSGAYAASDGWMDAHATFYGGGDASGTMGGACGYGNLYSEGYGTETAALSTALFNNGLSCGACYEIKCVSHQKWCLTGSIMVTATNFCPPNNALPNDAGGWCNPPLQHFDLSQPAFQQIAQYKAGIVPVAYRRVPCQKKGGISFTINGHSYFNLVLITNVGGSGDVQAVSIKGSRTDWQPMSRNWGQNWQSNANLNGQSLSFKVTTSDGRTLVSNDVVPDNWSFGQTFTGQQFP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2138 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Lja4g2138 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Lja4g2138 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Lja4g2138 248 Gene3D - 154 247 IPR036749 -
Lja4g2138 248 Gene3D - 13 151 IPR036908 -
Lja4g2138 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Lja4g2138 248 PANTHER EXPANSIN 7 247 - -
Lja4g2138 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Lja4g2138 248 PANTHER EXPANSIN-A15 7 247 IPR002963 GO:0009664
Lja4g2138 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Lja4g2138 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Lja4g2138 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Lja4g2138 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Lja4g2138 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Lja4g2138 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Lja4g2138 248 SUPERFAMILY Barwin-like endoglucanases 18 173 IPR036908 -
Lja4g2138 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Lja4g2138 248 SMART dpbb_1 60 145 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2138 Lja-Chr4 22951568 22953976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2138 1 247 Expansin Gene Family AT2G03090 75.200 1.62e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2138 - K20628 gmx:100816718 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5534 1 95611196 95613735 Lja4g2138 4 22951568 22953976 ECH
Lja1g2842 1 34215522 34217940 Lja4g2138 4 22951568 22953976 ECH
Lja2g1605 2 15786217 15789106 Lja4g2138 4 22951568 22953976 ECH
Lja2g1171 2 11133267 11134966 Lja4g2138 4 22951568 22953976 ECH
Lja4g2138 4 22951568 22953976 Lja4g2138 4 22951568 22953976 ECH