Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2137 ATGGAAAACATCTCAGTGCTATCTAAGGAAGAGGATCAGATGGATTTGCCTCCTGGATTTCGATTTCACCCAACTGATGAAGAGCTTATTAGCCATTACCTCTACAAGAAGGTCATTGACATCGAATTCTCTGCTAGGGCCATTGGAGAAGTGGACCTCAACAAGTGTGAGCCTTGGGATTTGCCATGGAAAGCGAAAATGGGAGAGAAAGAGTGGTACTTTTTCTGTGTGAGGGACAGAAAATACCCAACAGGGTTGAGGACAAACAGAGCCACAGAAGCAGGGTACTGGAAAGCCACAGGGAAAGACAAGGAGATTTTCAGAGGAAAATCGCTGGTTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCACCCAAAGGAGAGAAAAGCAATTGGGTCATGCATGAGTATAGGCTTGAAGGGAAATTCTCTGTTCACAACCTCCCTAAAACTGCAAAGAACGAGTGGGTTATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACACATATTTCTGGGATAATGAGGTTGGATTCTTTGGGTTTGGGGCATCATGAATTGGGTTCTAGTCTTCCACCTCTCACAGATTCATTGTCTTCCATTAATAAGACAAAAGCTCTGCTTGATTCGGCTTACGTGCCCTGCTTCTCCAATCAAATTGATGTTCAAAGGAATCACCAAGGAGGGATCTATGATTCCTTTTCCAACTCCATCTATGGAGTTTCTTCAAATCCATTAGAATTTTTTCCAAGAGTCCCACCTTCTTCTGGATCCTTATACTCGACTACTCAAGGTGTTCAAGTTCCATCTAGTTTGCCATTTCCAGGTTCTGTTTACAGCATGCAGGACCAGGCTATTCTGAGAGCCTTATATGAGAATAATGCTTCAAATTTTGTCAATGGATTCAAGGCTGAGAGGGACATGGTTAGTGTCTCTCAGGAAACTGATTTGACTACTGATATGAATGCTGAAACCTCTTCAGTGGTATCAAATTTTGAAATGGGTAGGAGGAGCTTTGAGAATCAGAATCAAAATCAAAATCAGAATCCTCCACCTGCTTCTGCTGCAGGAGTGGACCATGATCATGGTCTGTGGAGCTACTAA 1116 0.4283 MENISVLSKEEDQMDLPPGFRFHPTDEELISHYLYKKVIDIEFSARAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSLGLGHHELGSSLPPLTDSLSSINKTKALLDSAYVPCFSNQIDVQRNHQGGIYDSFSNSIYGVSSNPLEFFPRVPPSSGSLYSTTQGVQVPSSLPFPGSVYSMQDQAILRALYENNASNFVNGFKAERDMVSVSQETDLTTDMNAETSSVVSNFEMGRRSFENQNQNQNQNPPPASAAGVDHDHGLWSY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2137 371 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 6 350 - -
Lja4g2137 371 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Lja4g2137 371 MobiDBLite consensus disorder prediction 345 371 - -
Lja4g2137 371 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Lja4g2137 371 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Lja4g2137 371 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Lja4g2137 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2137 Lja-Chr4 22917409 22919529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2137 14 371 NAC Transcription Factor Family AT5G07680 57.103 9.36e-133 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g2137 NAM 9.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2137 - - lja:Lj0g3v0155359.1 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5539 1 95877597 95879616 Lja4g2137 4 22917409 22919529 ECH
Lja4g2137 4 22917409 22919529 Lja4g2137 4 22917409 22919529 ECH