Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2132 ATGGAAACTGGAGCTGGAATCGAAACACCCTGTCGATTTCAATCCGTGTCCAGATTGATACTATGTGCTCTCTCTGGAGCTCTCACTGGCTGTTTTGCAATTGCTGGGGCTCTCACAGGAGCTCTAGCAGGCGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTTTCCGGGGAGTTTCGTTGGGTGCCATTGCTGGGGCTATACTCTCGGTGGAGGTGTTGGAAGCTTCCCGGGCCTACTGGTGTATGGAGCAAACTGGTTCACGGGGTGCATCATCTATGGCAGATTTCATAGAAGAACTTGTTCGTGGAAGGCTTGTAGAGGAATCACTTACACCTGCTATTTTAACTGCTTACAACTTGCAATTTGAGCAGGTCGGGGTTGCAAACACAGGCTATGATGATATTCATGATGTTCATAACTTAGTAGCATCCAGAGGACTGTCAGGGGACTCATTGAAGAAACTGCCGCACCATATGATTTTGAAGGACATGAAGGCAGAGAATTCTTACTGTACAATATGTTTGCAGGATATTGAAGTAGGCGAAATTGCAAGAAGCCTACCTGACTGTCACCATACATTTCACTTGATATGCGTTGACAAGTGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGACAGAATGTGTAG 654 0.4633 METGAGIETPCRFQSVSRLILCALSGALTGCFAIAGALTGALAGALAAKATKSGFFRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGVANTGYDDIHDVHNLVASRGLSGDSLKKLPHHMILKDMKAENSYCTICLQDIEVGEIARSLPDCHHTFHLICVDKWLVKNDSCPVCRQNV* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2132 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 217 IPR013083 -
Lja4g2132 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 216 - -
Lja4g2132 217 SUPERFAMILY RING/U-box 153 217 - -
Lja4g2132 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 216 IPR044523 -
Lja4g2132 217 SMART ring_2 172 213 IPR001841 -
Lja4g2132 217 Pfam Ring finger domain 171 214 IPR001841 -
Lja4g2132 217 ProSiteProfiles Zinc finger RING-type profile. 172 214 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2132 Lja-Chr4 22856479 22864636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2132 15 217 C3H Transcription Factor Family AT1G74410 56.863 2.26e-76 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2132 - - gmx:100800105 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2132 4 22856479 22864636 Lja4g2132 4 22856479 22864636 ECH