Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2128 ATGGAGAGTGAAGCTGAGGAAATTCTTAATTTGAATAGCAGAGAGAACAATTGTGGGGGAGCTAATAGTAAGAGTGGTGATGCTTTTATTGACAGAAGCAAAGTCAGGATTTTGTTGTGTGATGATGATCCCAAGAGCTCAGAGGAGGTTTTTACCCTTCTTGTCAAATGTTCTTATCAGGTTACTCCAGTAAGATCAGCAAGGCAAGTAATTGATGCTCTCAATGCGGAAGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAATAAAGAAGGGCATGAAGTTGTTGAAGTACTTATCACGGGATAAAGAATTGCGCCGAATTCCTGTTATAATGATGTCTGCAAAAGACGAGGTACCAATCGTTGTAAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCGTTACGCACTAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGACTTGCAGAGAAAAACATCTTGAGTTATGACTTTGATATGGTAGCATCAGACCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACGGATGACAGGTCCAAAAGAAGCACCAATCCTGAGGCAGCCCAACAAGAACCAGAGGTTAGTATTTCTAAAGCTGCTGCTGTCATTGAGGAGCTTCCGGGTGCTCAGATATCAGAATGTAGGCCTAATGTACCCGGAATAAGTGATCGCAGAACAGGAAATTTTTCATCTGGTCCTAAGAAGAGTGAACTAAGGATTGGAGAGTCATCAGCCTTTTTCACTTATGTCAAAGCAACAACACTGAAGAGCAACGTTCAAGAGATTGCTCATGTTGACAACCATGCTACTACTCAAGTGAGGGTGGAAGATATGAATCAAGCATGTGCTCGACAGAGGGTTAATGACCTCAAAACACATGAAAATCAAGAAATGTTTGAAAGCCGTTCTCAAGAGGACTTACCCAGCAGTAATAGTTTCCCTGATTCTTTCTCTATTGAGAGATCTTGTACTCCACCTGCATCAGTGGAAGTTTCACAGCAAAAGAATTTCAGGGAAGAATATTATCCTCAGGGATCGTTGTATCCAAGCAATGGAAGTCGTGGTTCTAAGCTTGAACCGTCCGGCATGCCTGCTCAACATGCTTATCCATATTATTATAATTCAGGAGTTGTTAATCATGTTATGTTGCCATCATCTGCGCAACTATATCAAAAAAATATGCAAGACATCCATAGCCATGCTAATTCATCTATGATTGCGCAGTACAATCACCTTGCCCAGTGTTCTCCTCATGCGAATGGGATGACATCCTTCCCATATTATCCAATGAACATTTGCTTACAACCTGGTCAGGTATCTACACCTCATTCATGGCCATCATTAGGAAGTTCAGGTTCATGCGAAGTAAACTTGAGTAAGGCTGATAGGAGAGAAGCAGCATTGATGAAGTTTAAACAGAAGAGGAAAGACCGCTGCTTTGATAAGAAAATTCGGTATGTCAACAGGAAGCGGCTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCCGAAAGTTGAGCGGTGTTGATGTGTATCTTAATGGACAACCTGCTTCCGCTGACTATGATGAGGAGGAGGAAGAGGAGGAAGATAACCACGTAGCAAGAGATTCCTCTCTTGAGGATGCTTGA 1692 0.4249 MESEAEEILNLNSRENNCGGANSKSGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEAAQQEPEVSISKAAAVIEELPGAQISECRPNVPGISDRRTGNFSSGPKKSELRIGESSAFFTYVKATTLKSNVQEIAHVDNHATTQVRVEDMNQACARQRVNDLKTHENQEMFESRSQEDLPSSNSFPDSFSIERSCTPPASVEVSQQKNFREEYYPQGSLYPSNGSRGSKLEPSGMPAQHAYPYYYNSGVVNHVMLPSSAQLYQKNMQDIHSHANSSMIAQYNHLAQCSPHANGMTSFPYYPMNICLQPGQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNGQPASADYDEEEEEEEDNHVARDSSLEDA* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2128 563 MobiDBLite consensus disorder prediction 232 255 - -
Lja4g2128 563 SMART REC_2 35 150 IPR001789 GO:0000160
Lja4g2128 563 MobiDBLite consensus disorder prediction 315 379 - -
Lja4g2128 563 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Lja4g2128 563 MobiDBLite consensus disorder prediction 534 563 - -
Lja4g2128 563 Gene3D - 35 228 - -
Lja4g2128 563 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 546 IPR045279 GO:0009736
Lja4g2128 563 MobiDBLite consensus disorder prediction 321 376 - -
Lja4g2128 563 MobiDBLite consensus disorder prediction 180 214 - -
Lja4g2128 563 SUPERFAMILY CheY-like 31 160 IPR011006 -
Lja4g2128 563 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 2 546 - -
Lja4g2128 563 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Lja4g2128 563 ProSiteProfiles CCT domain profile. 483 525 IPR010402 GO:0005515
Lja4g2128 563 Pfam CCT motif 483 525 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2128 Lja-Chr4 22801032 22807087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2128 24 562 Response Regulator Gene Family AT5G61380 50.715 4.09e-180 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lja4g2128 Response_reg 3.4e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2128 K12127 - gmx:100786522 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2128 4 22801032 22807087 Lja4g2128 4 22801032 22807087 ECH