Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2121 ATGGGGTGTGTGTTTGTGAAGCAGGGAGTGACGGTGACGCCTGCCGGCGTAGACCACTGGGTTGAGTCGGAGAGGAACAAGAAGAAGAAGACGGGGACGGGGACGGCGACGAGTGAGTCAGTGGGAGTGAGTCGGAGTGGGTCCGGGAGGGCGAGTTCGAATTGTGGGAGTGAGTCTCTGAGCTTTAGATTGGGGAACCTGAGCAAGTATGTGGAGGGGGAGCAAGTCGCCGCCGGTTGGCCTGCGTGGCTCAGCGCCGTTGCGTCGGAAGCCATTCACGGCCTGATTCCCCTCCGAGCTGATGCATATGAGAAGCTTGAAAAGATTGGGCAAGGTACCTATAGTAGTGTTTTCAGAGCAAAGGAGACTGAGACTGGGAAGATAGTGGCTCTGAAGAAGGTGAGATTTGACAATTTTGAGCCAGAAAGTGTGAGGTTTATGGCACGGGAAATACTGATTCTGAGAAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCCAGATTGTCTTGTAGCTTATACCTTGTATTTGAGTACATGGAGCATGACATCACAGGGCTCTTGTCTAGACCAGATATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTAGAGCATTGTCACTCGCGGGGTGCAATGCACCGAGACATCAAAGGATCAAATCTTCTGGTGAATAATGAGGGGGTATTAAAGGTGGCAGATTTTGGATTGGCAAATTTCACCAATGCCGGGAACAGGCAGCCCCTCACCAGTCGCGTCGTCACCTTATGGTACCGCCCGCCGGAACTTTTGCTTGGTTCAACAAATTATGGTCCATCTGTGGATCTCTGGAGTGTTGGTTGTGTATTTGCAGAGCTACTAGTTGGAAAGCCGATACTTAAAGGGAGAACAGAGGTTGAACAATTACACAAAATCTTCAAGCTTTGTGGCACTCCGCCTGACGAATACTGGAAAAAGACCAGACTTCCTCATGCAACTTTATTCAAGCCACAGCAACAATATGATAGTTGCCTCCGAGAGACATTCAAAGATTTTCCTGAAGCCTGTGTAAATCTACTACAAACTCTTCTTTCTATCGATCCAAACAAACGTGGGACTGCCTCATCTGCTCTCTCATCGGAGTATTTCAAAACAAAACCTTATGCATGTGACCCGTCAAGCTTACCGATATACCCACCTAGCAAGGAGATTGATTCAAAACATGAGGAGGACTCAAGAAGGAAAAAGATTAGTGGTAGAGTTTGTGGACCTGAAACAAGAAAACAATCAAGAAAGCCACTAGCACTGAGTAAATTAGCCCCACCAGAGGGTTTGGCAACTCAAATGCAAACTTCGCTACAGATGGATGACAGATCGGTGCATGTCCATAAAGAAGAGACCACTAACATAGGTGAGGAGGCGCCAAAGACATCAAGTGATAAACCAGAAGATGCTTCCCAGATGAAGAGTGCATCTCAAGTAGACATTCCCTTTCCAGGACCATTACAGGTTTCAAGATCAAGCGGGTTTGCATGGGCGAAAAGGCGTAAAGAAGACGCTTCAATTAGATCCCACAGTCGATCTATTTCTAAAGGACATATATTTAATTTATTAGAAAATTCTGCACTAAATTCAAGGAATAATTCTGACTCAAGAAACTATGAAAACAAGGAAATTTTGGGGGGACTCACAAACACAAGGGGCCATGATCTGCTTGAGATTTCAAAGCTTGTAATGCAAAATCAATGGAGTAAGTTTGATCGTCCGGATTCATTTGATACTTCTGATGAGTACCATTCACAAGAACTGTCAAAGGTGCTTTATCATAGAGAAGATTCACTGTCCAAGAGAAGTAACCTGAGTTATCAGGATCAAGGGGAGAAAGTTGAATTTTCAGGACCCCTTCTATCTCAAATGCATACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCACATTCGCCGTACTGTCCGAAGATCATGGTTTCAAAAAGGTAAGAAGCACGGGAAGCAACTGCAAATGTAG 2037 0.4516 MGCVFVKQGVTVTPAGVDHWVESERNKKKKTGTGTATSESVGVSRSGSGRASSNCGSESLSFRLGNLSKYVEGEQVAAGWPAWLSAVASEAIHGLIPLRADAYEKLEKIGQGTYSSVFRAKETETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSLYLVFEYMEHDITGLLSRPDIKFSESQIKCYMKQLLSGLEHCHSRGAMHRDIKGSNLLVNNEGVLKVADFGLANFTNAGNRQPLTSRVVTLWYRPPELLLGSTNYGPSVDLWSVGCVFAELLVGKPILKGRTEVEQLHKIFKLCGTPPDEYWKKTRLPHATLFKPQQQYDSCLRETFKDFPEACVNLLQTLLSIDPNKRGTASSALSSEYFKTKPYACDPSSLPIYPPSKEIDSKHEEDSRRKKISGRVCGPETRKQSRKPLALSKLAPPEGLATQMQTSLQMDDRSVHVHKEETTNIGEEAPKTSSDKPEDASQMKSASQVDIPFPGPLQVSRSSGFAWAKRRKEDASIRSHSRSISKGHIFNLLENSALNSRNNSDSRNYENKEILGGLTNTRGHDLLEISKLVMQNQWSKFDRPDSFDTSDEYHSQELSKVLYHREDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQKGKKHGKQLQM* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2121 678 SUPERFAMILY Protein kinase-like (PK-like) 98 394 IPR011009 -
Lja4g2121 678 Gene3D Phosphorylase Kinase; domain 1 95 185 - -
Lja4g2121 678 MobiDBLite consensus disorder prediction 467 504 - -
Lja4g2121 678 Gene3D Transferase(Phosphotransferase) domain 1 186 426 - -
Lja4g2121 678 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Lja4g2121 678 MobiDBLite consensus disorder prediction 467 487 - -
Lja4g2121 678 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2121 678 MobiDBLite consensus disorder prediction 398 447 - -
Lja4g2121 678 MobiDBLite consensus disorder prediction 406 431 - -
Lja4g2121 678 MobiDBLite consensus disorder prediction 33 58 - -
Lja4g2121 678 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 34 667 - -
Lja4g2121 678 MobiDBLite consensus disorder prediction 22 58 - -
Lja4g2121 678 Pfam Protein kinase domain 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2121 678 ProSiteProfiles Protein kinase domain profile. 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2121 678 CDD STKc_CDK9_like 103 387 - -
Lja4g2121 678 PANTHER CELL DIVISION PROTEIN KINASE 34 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2121 Lja-Chr4 22733425 22738332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2121 100 445 Core Cell Cycle Gene Families AT5G10270 48.619 4.96e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja4g2121 Pkinase 8.3e-71 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5548 1 96339034 96344326 Lja4g2121 4 22733425 22738332 ECH
Lja4g2121 4 22733425 22738332 Lja4g2121 4 22733425 22738332 ECH