Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2112 ATGTCACAGCAGGAAACACAATCCTGTGGTGGCTTCCTATTACTCCTTTCCTGGATCCTTCTTTCAGGTACAGTTTTTGCTGGGGATTCTTTGGACACAGACAAACAGGTTCTGTTGAAGCTGAAGGACTATCTAGATAACAGAACTCTTGCAGATCAAGGAGTTTACATAAATTGGAACACCACCACCTCCAACCCTTGTGAATGGCAAGGAATCAGGTGCAGCAGAGGGAGCAGAGTGGTTGGTGTATACCTCTCCGGCAGCGACATCACCGGGGAGATATTCCAGAGCTTCTCGGAGCTAACAGAACTCACACACCTTGATCTCTCTCAGAACACACTCTTTGGAGGGATTCCTGAGGATTTGAGGCGCTGCCAAAAGCTGGTTCATCTCAACCTGTCACATAATATTCTTGATGGGGTGCTGAATTTGACCGGGTTCACAGGCTTGGAAACACTTGACTTGTCCATGAATAGATTTCAAGGGGAGCTTGGGTTGAATTTCAATTTCCCTGCCATTTGTGGAAATTTAGTCACTTTGAATGTCTCAGGTAATAACTTAACTGGTGGGGTTGGTGATGGATTTGATCAGTGTCACAAGCTGCAGTACTTGGATTTGAGCACCAATAATCTAAGCGGGGGCATGTGGATGAGATTTGCAAGGCTCAGACAGTTCTCGGTCGCGGAGAATCATCTCACCGAGACCGTTCCTTCAGAAGCTTTTCCGTCGAATTGTAGCCTTGAACTACTAGACCTTTCTCAGAATGGGTTTGTTGGTGAGGCTCCAAAAGGGGTTGCTAATTGCAAGAATTTAACCATTCTGAATCTTTCTAGCAACAATTTTACAGGTGACATTCCCATTGAAATGGGGTCTATTTCTGGCCTCAAAGCACTGTACTTGGGGGGGAACAACTTTTCAAGAGATATTCCAGAAACCCTTGTGAACTTGAGCAATTTGGTTTTCTTGGATTTGAGTAGAAACAGATTTGGTGGGGACATACAAGAGATATTTGGGAAATTCAATCAGGTAAGCTTTCTTCTATTGCACTCCAATTCCTACACTGGAGGATTGAGATCATCAGGAATTCTTACCTTGCCAAAAGTTGAGAGGTTAGACCTAAGCTTCAACAACTTTTCAGGTCCATTACCTGCTGAAATATCTCAGATGTCAAATCTGAAATTTTTAATGTTATCACATAACCAGTTCAATGGCTCTATTCCACCTGAATTTGGAAACATGACTCACCTTCAAGCACTTGACCTATCCTTGAACAATCTGAGTGGGGCAATACCACCAAGCCTTGGAAACTTGAATTCCCTTTTATGGTTGATGCTTGCAGATAACTCATTAACTGGAGGAATCCCCCCAGAGTTGGGAAACTGCTCAAGTTTGTTGTGGTTAAACCTTGCTAATAATAGGCTCACCGGAAAGTTTCCTCCTGAATTGTCCCAAATTGGAAGGAATGCAATGATAACATTTGAATCAAATAGGCAAAATGATCGAATCACTGCTGGCTCTGGTGAGTGTTTGGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTCTATGACATCTTGACAAGGAAAAATTGTAGAGGCCTTTGGGATAAATTGCTCAAAGGATATGGCATTTTCCCCTTTTGCACACCAGGGTCCTCCTTTCAGACAGCTCAGATATCAGGCTATGTTCAGTTAATGGGGAACCAGCTCAGTGGCGAAATCCCTTCAGAGATTGGCTCAATGGTGAACTTCAGCATGCTGCACTTGGGCTACAACAATTTCTCTGGGAAACTCCCACCACAGCTGGGAGGTATTCCACTTGTGGTCTTGAACATGACTAGAAACAAATTTTCAGGTGAAATCCCTTCAGAACTTGGCAACATGAAATGCATGCAGATGCTGGACTTGTCTTTCAACAATTTCTCTAAGACTTTTCCCACAAGTTTGAACAGATTGGCTCAGCTTAACAAGTTCAACATCTCCTACAACCCCTTCATATCTGGTCCGGTCCCATCAACCGGACAATTTGTTACTTTTGATAAATATGCTTACATAGGAGACCCCCTCTTGATCCTTCCCCGTTTCATTGAAAACACTACAAATAACAGAAACACAACCCTTCAAAAAGACCACAAAAGGCAAACAAAGTTGTCTGTGTTTTTGGTGTTTGTAGCCATAACACTTGTTTTCATGGTGGTTGGGCTTCTTACTATTGTAATTTGTGTATTGGTGAAAAGTCCATCAGATGAACCAGGATATCTCTTGAAGGAGACAGCAAAAGAGTGGCATGAATTAACCAGCTCCGGATCCTCATCACCATGGTTGTCTGATACAGTTAAGGTGATCCGGTTGAACAAGACAGTGTTCACCTATGATGACATTTTGAAAGCAACAGGAAGCTTCTCAGAGAGAAGAATCATAGGAAAAGGAGGGTTTGGAACAGTATACAGAGGAGTGTTTCCAGATGGGAAAGAAGTGGCAGTGAAGAAGCTTCAAAGGGAAGGACTTGAAGGTGAAAAGGAGTTCAAAGCTGAAATGGAGGTCTTAAGTGGAGATGGGTTTGGTTGGCCTCATCCAAATCTTGTCACACTCTATGGTTGGTGTTTAAACGGTTCACAGAAGATACTTGTATATGAGTACATACAAGGTGGAAGCTTGGAGGATCTAGTAACTGATAGGACACGTTTTTCATGGAAAAGGAGGCTGCAAGTAGCAACTGATGTGGCTAGAGCATTAGTCTATTTACACCATGAGTGCTATCCTTCAATTGTGCATAGAGATGTGAAGGCTAGCAATGTTTTGCTAGAGAAAGATGGGAAGGCCAAAGTTACAGACTTTGGGCTTGCAAGAGTGGTTGATGTAGGGGATAGCCATGTGAGCACCATGGTGGCTGGGACAGTGGGTTATGTTGCGCCGGAATATGGACAGACGTGGCAAGCCACCACGAAAGGCGATGTTTACAGTTTTGGGGTGCTGGTTATGGAGCTTGCGACAGCGAGGCGCGCTGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGGCTAGGCGTGTGACGCGTCATGGGTCGAGCCGCCGCTCTGTGCCAGTTTTGCTCATGGGTACTGGACTTGTTGGTGGGGTGGAGGAGATGGGTGAGTTGCTGAGAATTGGTGTGAAGTGTACTTCTGAGGTGCCTCATGCTAGACCTAACATGAAGGAAGTTCTGGCTATGTTGGTTAAGATATCTAACCTCAGAGGGGACTCTAGTTATTGA 3264 0.4427 MSQQETQSCGGFLLLLSWILLSGTVFAGDSLDTDKQVLLKLKDYLDNRTLADQGVYINWNTTTSNPCEWQGIRCSRGSRVVGVYLSGSDITGEIFQSFSELTELTHLDLSQNTLFGGIPEDLRRCQKLVHLNLSHNILDGVLNLTGFTGLETLDLSMNRFQGELGLNFNFPAICGNLVTLNVSGNNLTGGVGDGFDQCHKLQYLDLSTNNLSGGMWMRFARLRQFSVAENHLTETVPSEAFPSNCSLELLDLSQNGFVGEAPKGVANCKNLTILNLSSNNFTGDIPIEMGSISGLKALYLGGNNFSRDIPETLVNLSNLVFLDLSRNRFGGDIQEIFGKFNQVSFLLLHSNSYTGGLRSSGILTLPKVERLDLSFNNFSGPLPAEISQMSNLKFLMLSHNQFNGSIPPEFGNMTHLQALDLSLNNLSGAIPPSLGNLNSLLWLMLADNSLTGGIPPELGNCSSLLWLNLANNRLTGKFPPELSQIGRNAMITFESNRQNDRITAGSGECLAMKRWIPADYPPFSFVYDILTRKNCRGLWDKLLKGYGIFPFCTPGSSFQTAQISGYVQLMGNQLSGEIPSEIGSMVNFSMLHLGYNNFSGKLPPQLGGIPLVVLNMTRNKFSGEIPSELGNMKCMQMLDLSFNNFSKTFPTSLNRLAQLNKFNISYNPFISGPVPSTGQFVTFDKYAYIGDPLLILPRFIENTTNNRNTTLQKDHKRQTKLSVFLVFVAITLVFMVVGLLTIVICVLVKSPSDEPGYLLKETAKEWHELTSSGSSSPWLSDTVKVIRLNKTVFTYDDILKATGSFSERRIIGKGGFGTVYRGVFPDGKEVAVKKLQREGLEGEKEFKAEMEVLSGDGFGWPHPNLVTLYGWCLNGSQKILVYEYIQGGSLEDLVTDRTRFSWKRRLQVATDVARALVYLHHECYPSIVHRDVKASNVLLEKDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWARRVTRHGSSRRSVPVLLMGTGLVGGVEEMGELLRIGVKCTSEVPHARPNMKEVLAMLVKISNLRGDSSY* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2112 1087 SUPERFAMILY Protein kinase-like (PK-like) 786 1076 IPR011009 -
Lja4g2112 1087 Pfam Protein kinase domain 806 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2112 1087 ProSitePatterns Protein kinases ATP-binding region signature. 811 834 IPR017441 GO:0005524
Lja4g2112 1087 ProSiteProfiles Protein kinase domain profile. 805 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2112 1087 Gene3D Ribonuclease Inhibitor 556 711 IPR032675 -
Lja4g2112 1087 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 1081 - -
Lja4g2112 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 927 939 IPR008271 GO:0004672|GO:0006468
Lja4g2112 1087 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
Lja4g2112 1087 Gene3D Ribonuclease Inhibitor 145 242 IPR032675 -
Lja4g2112 1087 Pfam Leucine rich repeat 270 329 IPR001611 GO:0005515
Lja4g2112 1087 Pfam Leucine Rich repeat 413 428 IPR001611 GO:0005515
Lja4g2112 1087 Gene3D Ribonuclease Inhibitor 32 144 IPR032675 -
Lja4g2112 1087 Gene3D Ribonuclease Inhibitor 343 410 IPR032675 -
Lja4g2112 1087 Gene3D Ribonuclease Inhibitor 411 510 IPR032675 -
Lja4g2112 1087 Gene3D Ribonuclease Inhibitor 243 342 IPR032675 -
Lja4g2112 1087 Gene3D Transferase(Phosphotransferase) domain 1 885 1085 - -
Lja4g2112 1087 SMART serkin_6 805 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2112 1087 CDD STKc_IRAK 811 1078 - -
Lja4g2112 1087 Gene3D Phosphorylase Kinase; domain 1 772 884 - -
Lja4g2112 1087 SUPERFAMILY RNI-like 77 287 - -
Lja4g2112 1087 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1081 - -
Lja4g2112 1087 SMART LRR_typ_2 365 388 IPR003591 -
Lja4g2112 1087 SMART LRR_typ_2 389 412 IPR003591 -
Lja4g2112 1087 SMART LRR_typ_2 632 656 IPR003591 -
Lja4g2112 1087 SMART LRR_typ_2 316 339 IPR003591 -
Lja4g2112 1087 SMART LRR_typ_2 101 125 IPR003591 -
Lja4g2112 1087 SMART LRR_typ_2 413 437 IPR003591 -
Lja4g2112 1087 SMART LRR_typ_2 219 243 IPR003591 -
Lja4g2112 1087 SUPERFAMILY L domain-like 220 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2112 Lja-Chr4 22666277 22670304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2112 58 1078 Receptor kinase-like Gene Family AT1G55610 32.187 8.19e-154 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Lja4g2112 Pkinase 8.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2112 - - gmx:100783886 1669.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2112 4 22666277 22670304 Lja4g2112 4 22666277 22670304 ECH