Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2100 ATGGAAGAAGAACAAGAATTCAAGCATGTTTGCAAGTTCTGCAGCAAGAGCTTCCCCTGTGGTAGATCCTTGGGGGGTCACATGAGGTCTCATGTCACCAACTTGTCTTCTAAGACAGAGGAGAAAGGAAAGAAGGTTTTGTCTCAGAACAATGGTGGAGATTGCAACACTGGTTATGGTCTCAGGGAGAATCCAAAGAAGACTTGGAGATTTGCAGATTCAAGTGAAGAAGACACTTCAATTATGGTGATCACTGACAAGTTCTGCAAGGAGTGTGGCAAAGGTTTCCAATCTTGGAAGGCCTTGTTTGGCCACATGAAATCCCACTTTGAGAAACAAAGAGTAGTTTCAAATTCTACTAGCTTGGAGGATCAAGATTCATGGACTAATAGTAATAATGCTATTGCTAATGCTACTACCACCCAGAAGTTGATCATGGATTCTCAATCTGACAATGAAATCACTGCTCCAAAACGAAAGAGAAGGTCAGAGAGAAGAACAAGGTACACAGGTTCTGCTTCTGCTGCTGCAACTTCTTCTGTTTCCTTTGCCAATCCTGGTTCTTCTTCTATTTCTGATGTTGAACATGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAAAGATTTGAGTCCTTGGAGTGGTCTTCATTCTCGTGCTGAATCCTCTGACAACAACTCTGCTAACTTCGAAGCTCCTCGATCCTCGGTTCGAACTAATCTAGTTACTAGAATTGAAGGAAACAAGAAGTGGGAGTTTGCGAATTCAATTCCTGCAAATTTCAAGTCTAAAGGGAAAAGTTCAGAGCTTTTGTCCACTGAGTCTCCTGAAAATGAGTTCAAAATGAAGAGAAGTGGAGTTTCCCTTAAAGAGTTCATCAAGAATGGAAAATCTAACAGCAAGTCTGAGCTTGATTTTGAAGGTGAACAGGGGAAAAACAGAGTCAATGGAACAGAGTCAGTTTTATCAAAATACAGTTCAATCAAGACCAAGTTTCTGGATGCTGAATTGGAGTCAAATTCCTTGAAGAATCGTGTGAAAAGGCCTTTGGAATGTGAATTCAGCAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACTACTTGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGTGGCCACAGAGCTAGTCACAAGAAGAACAACAAAGGGTGCTTTGCTTCAAAAAATGAGAGCAGTGAAAACAGCATTGAAACTGAGCCAAAAACTGAAATCAAGCTCAAGAAGAGCAGTGGAAATGAACATGTTGAACATGAACTTGGTGCTGGTCTTAGCAATGAGGTAGAAAGAGTGAAAGAGTCCAAGAAGAACAAAGGTCATGAGTGTCCAATTTGCCTTAAGGTTTTCCAATCTGGACAAGCCTTAGGTGGCCATAAGAGATCTCATTTGTCTGGTAAGTCTGAGATTAGAAACTTTCAACCACTTGCTGTAGTTCAAAAACCAGTGCCAGAAATAAGGGACTTCCTTGATCTTAATCTTCCAGCTTCTACAGAGGAAGAAAGCACTAGTTATGCTGATTCTAGCAGGCCCTGGTGGGTAGTAGACTAG 1578 0.4138 MEEEQEFKHVCKFCSKSFPCGRSLGGHMRSHVTNLSSKTEEKGKKVLSQNNGGDCNTGYGLRENPKKTWRFADSSEEDTSIMVITDKFCKECGKGFQSWKALFGHMKSHFEKQRVVSNSTSLEDQDSWTNSNNAIANATTTQKLIMDSQSDNEITAPKRKRRSERRTRYTGSASAAATSSVSFANPGSSSISDVEHEQEEVAMSLMMLSKDLSPWSGLHSRAESSDNNSANFEAPRSSVRTNLVTRIEGNKKWEFANSIPANFKSKGKSSELLSTESPENEFKMKRSGVSLKEFIKNGKSNSKSELDFEGEQGKNRVNGTESVLSKYSSIKTKFLDAELESNSLKNRVKRPLECEFSKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKNNKGCFASKNESSENSIETEPKTEIKLKKSSGNEHVEHELGAGLSNEVERVKESKKNKGHECPICLKVFQSGQALGGHKRSHLSGKSEIRNFQPLAVVQKPVPEIRDFLDLNLPASTEEESTSYADSSRPWWVVD* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2100 525 MobiDBLite consensus disorder prediction 146 195 - -
Lja4g2100 525 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Lja4g2100 525 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 523 - -
Lja4g2100 525 Pfam C2H2-type zinc finger 9 31 - -
Lja4g2100 525 Pfam C2H2-type zinc finger 89 109 - -
Lja4g2100 525 Pfam C2H2-type zinc finger 450 473 - -
Lja4g2100 525 Pfam C2H2-type zinc finger 366 390 - -
Lja4g2100 525 ProSitePatterns Zinc finger C2H2 type domain signature. 452 472 IPR013087 -
Lja4g2100 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 366 393 IPR013087 -
Lja4g2100 525 SUPERFAMILY beta-beta-alpha zinc fingers 6 33 IPR036236 -
Lja4g2100 525 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Lja4g2100 525 Gene3D Classic Zinc Finger 363 472 - -
Lja4g2100 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 31 IPR013087 -
Lja4g2100 525 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 523 - -
Lja4g2100 525 MobiDBLite consensus disorder prediction 218 234 - -
Lja4g2100 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Lja4g2100 525 SUPERFAMILY beta-beta-alpha zinc fingers 88 388 IPR036236 -
Lja4g2100 525 MobiDBLite consensus disorder prediction 215 234 - -
Lja4g2100 525 SMART c2h2final6 9 31 IPR013087 -
Lja4g2100 525 SMART c2h2final6 87 109 IPR013087 -
Lja4g2100 525 SMART c2h2final6 366 388 IPR013087 -
Lja4g2100 525 SMART c2h2final6 450 472 IPR013087 -
Lja4g2100 525 ProSitePatterns Zinc finger C2H2 type domain signature. 368 388 IPR013087 -
Lja4g2100 525 MobiDBLite consensus disorder prediction 169 192 - -
Lja4g2100 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 450 477 IPR013087 -
Lja4g2100 525 Gene3D Classic Zinc Finger 6 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2100 Lja-Chr4 22564123 22566694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2100 1 238 C2H2 Transcription Factor Family AT1G26610 40.316 3.20e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g2100 zf-C2H2_6 4.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2100 - - gmx:102666705 586.645