Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2085 ATGGCGTCGTCGTCGGCCAAGCGATGCCACTACGAGGTTCTCGGCCTCCCCCGTGATTGCACCCCCGACGAGATCCGATCAGCCTACCGCCGCCTCGCCCTTCAGCGCCACCCTGACAAGCTCGTCCAAACCGGCATCTCCCAATCCGAAGCCACCGCACAGTTCCAGGAGCTTCAACAAGCCTATGAGGTCCTCTCCGACCCCAAAGAACGCTCCTTCTACGACTCCCACCGTTCGCAAATCCTCTTCGCCGACCCCAACTCCTCCTCCAACTCCCTCGTCCCTGACCTCTTCTCGTTTTTCTCCAATTCCGTCTTCTCCGGCTACTCCGATTCCGGCAAGGGCTTCTACAAGGTCTACTCCGGCGTCTTCGACAAAATCCACGCTAATGAGGTTAATTTCGCCAAGAAGATGGGTTTACCTGTTCCTCAGGCTCCACTCATGGGGAATTTGGATAGCCCCTATGCTCAGGTCACTGCGTTTTACGGTTACTGGATGGGGTTTTCGTCGGTGATGGACTTTTGCTGGGCGGATGAGTATGATGTGATGGCTGGTCCGAACCGGCGGTCGCGGCGGTTGATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAAGAAGGAGTACAATGAGACGGTGAGGAGGTTGGCTGATTTTGCGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAAGGTTGCTGAGATGGAGAAGAAGAAAGAGGAGGAGAGGGAGAAGAAGAAGAGGTTGGAGAAGGAGAAGAAGGAGAGGGCTATGGCTTATGAGGAGCCTGAGTGGGCTAAGGTTGAGGAGGGGGAAGAGGCGAGCTGGTTTGAGGAGGTGGAGGAGGAGGAGGAGAAGAAGGATGAGAATGAGTTTTATTGTGTGCTTTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAGTCCAAGAAGCATAAGGAGAAAGTTGCAGAGTTCAAGGATTCACTTGCCGATGAAGAGGATTTAGAAGCAGAGGTGGAAGGAGAAGAAGAAGATGTAGGAGCCGAGAACGGGAGACCGGAAAGTGAGGAGGGTGGAATTGAGGTGAATGATGATCAATTGGAGGAGGTTGATGATTTGGAGGAGAGGATTAGAGATGGTCTTAATGTTGCAGAAGAGGAGACTAGAAATGAGGTTAAACTGAATGATGATGGTGATGGTAACGATGATGATGATGATGATGATGATGATTTTGATGCCACACATTCAAAGGAGAGTGAAAAGGCTGATGTTTCAGTTGATTTTGATGATGATGAAAATGGTTTTCTTGAAGCAATGGTGGCGGGGCGCAAGAGCAAAAAACCCGGTGCTTCAACACAGAAGCCCAAGGCTTCAGTAACTCCATCTCAAACTGAGAATGAGAATGAGAATGTGGATGAAAATGAGAATGAGAATAAGAATGAGAATGATGGGGTTGGCTTTATGGAATATAACAACCAGAAGAGCACAAGAAAGAAGCGTCGAGCCAAGAAAGAGAAGGGTAGGGTGGATGAACCTCATGGGGCTGCTTTCAGTGCTAATTATGAGAATAGAAACAGTGATGGAAATAATAATTCTTTTGCAGAAGAGTCTAGTTCCCAGTATTCTGTGGAAAATGAGGAAAATGGTAAAGAGAATGAGCAGGTAGGTAGAGATAAGAAGAGTTCAAATCAACCAGTTGACAAGAAAGGAACTTCCAAGGATGCGAAAACTAGAGCAAAAACTTCATCCAAAGGAAGAAAAGCAAAGGCATCAAAGAATCTTGACAATATTTGTGAGGCATGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAGCATCTGGGCGATTCTGGACATGCCAGTATAAAAGGTCGATGA 1884 0.4766 MASSSAKRCHYEVLGLPRDCTPDEIRSAYRRLALQRHPDKLVQTGISQSEATAQFQELQQAYEVLSDPKERSFYDSHRSQILFADPNSSSNSLVPDLFSFFSNSVFSGYSDSGKGFYKVYSGVFDKIHANEVNFAKKMGLPVPQAPLMGNLDSPYAQVTAFYGYWMGFSSVMDFCWADEYDVMAGPNRRSRRLMEEENNKVRRKAKKEYNETVRRLADFAKKRDKRVIDMKVKKVAEMEKKKEEEREKKKRLEKEKKERAMAYEEPEWAKVEEGEEASWFEEVEEEEEKKDENEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSLADEEDLEAEVEGEEEDVGAENGRPESEEGGIEVNDDQLEEVDDLEERIRDGLNVAEEETRNEVKLNDDGDGNDDDDDDDDDFDATHSKESEKADVSVDFDDDENGFLEAMVAGRKSKKPGASTQKPKASVTPSQTENENENVDENENENKNENDGVGFMEYNNQKSTRKKRRAKKEKGRVDEPHGAAFSANYENRNSDGNNNSFAEESSSQYSVENEENGKENEQVGRDKKSSNQPVDKKGTSKDAKTRAKTSSKGRKAKASKNLDNICEACGEEFESRNKLHKHLGDSGHASIKGR* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2085 627 MobiDBLite consensus disorder prediction 307 329 - -
Lja4g2085 627 MobiDBLite consensus disorder prediction 398 414 - -
Lja4g2085 627 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
Lja4g2085 627 Gene3D Classic Zinc Finger 281 343 - -
Lja4g2085 627 MobiDBLite consensus disorder prediction 307 595 - -
Lja4g2085 627 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Lja4g2085 627 CDD DnaJ 9 67 IPR001623 -
Lja4g2085 627 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Lja4g2085 627 SUPERFAMILY beta-beta-alpha zinc fingers 282 337 IPR036236 -
Lja4g2085 627 SMART dnaj_3 8 70 IPR001623 -
Lja4g2085 627 MobiDBLite consensus disorder prediction 452 468 - -
Lja4g2085 627 ProSiteProfiles Zinc finger C2H2 type domain profile. 597 626 IPR013087 -
Lja4g2085 627 Gene3D DnaJ domain 1 92 IPR036869 -
Lja4g2085 627 Pfam DnaJ domain 10 75 IPR001623 -
Lja4g2085 627 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 3 627 IPR044648 -
Lja4g2085 627 MobiDBLite consensus disorder prediction 374 397 - -
Lja4g2085 627 PRINTS DnaJ domain signature 29 44 IPR001623 -
Lja4g2085 627 PRINTS DnaJ domain signature 11 29 IPR001623 -
Lja4g2085 627 PRINTS DnaJ domain signature 50 70 IPR001623 -
Lja4g2085 627 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 324 IPR013087 -
Lja4g2085 627 SUPERFAMILY Chaperone J-domain 5 107 IPR036869 -
Lja4g2085 627 Coils Coil 371 391 - -
Lja4g2085 627 MobiDBLite consensus disorder prediction 238 257 - -
Lja4g2085 627 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Lja4g2085 627 ProSitePatterns Zinc finger C2H2 type domain signature. 599 621 IPR013087 -
Lja4g2085 627 MobiDBLite consensus disorder prediction 330 346 - -
Lja4g2085 627 Coils Coil 326 346 - -
Lja4g2085 627 MobiDBLite consensus disorder prediction 547 582 - -
Lja4g2085 627 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Lja4g2085 627 SMART c2h2final6 295 319 IPR013087 -
Lja4g2085 627 SMART c2h2final6 597 621 IPR013087 -
Lja4g2085 627 MobiDBLite consensus disorder prediction 520 546 - -
Lja4g2085 627 Coils Coil 191 222 - -
Lja4g2085 627 Coils Coil 228 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2085 Lja-Chr4 22416539 22419326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2085 1 627 C2H2 Transcription Factor Family AT1G74250 49.629 6.21e-175 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g2085 DnaJ 1.3e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2085 K09506 - gmx:100788305 774.622