Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2081 ATGAGTTCTCATGGGCCGGGCCTAAGCATGACAATATTGGGCTTAGATACACTCTCAAGTGGTTTTAGCTACACACACCGGCTCAAACAAACAACTCAGGTTACAACAATGGCGTTCTTTGGTAGACTCGGGAACTTGCTTAGACAATCTGCCAATAGGCAGATTAGTGCTGAAATGCGCTCATCTCCGTCCTTTTTCCAGGCTGTACGATGCATGTCGTCTGCTCCCAGCTCGAAGCTGTTTATAGGAGGTGTTTCGTACTCTACTGATGAGGAGAGTCTGAGGGAAGCTTTTTCCAAATATGGTCAAGTTAGGGAAGTCAAGATAATTTTGGACCGTGAGACTGGTAGATCCAGAGGATTTGGATTTGTCACGTACGATTCAGTTGAGGAGGCATCAAGTGCCCTTCAGGCATTGGATGGCCAGGAGCTTCATGGTCGTCAAGTTAGGGTAAATTTTGCTAATGAAAGGCCTCGTAGTTATGGTGGTGGTGGTGGTTATGGCGGTGGTGGTTATGGTGGTGGTGGTGGTTATGGTGGCGGTGGTTATGGTGGAGGCGGCTATGGAGGTGGGGGTGGCTATGGAACTGGTGGTAATTATGGTAGCGGAACTGGTGGTAATTATGGTAGCTCCCCATATGGGAGTGCTCCAAGTAGTGGAGGTGGCTATGGAACTGGTGGCAATTATGGGGGTGGTGCTGGCAATGACTACTCTTCTCCTGACAGTTTTGGAACCAGCAGTGCTGGAGGCAGTTTCAGTGGAGGTGGAAATTTTGGTGATGCTGGGGGTGTTGGCCGTCATGAAAGTTTTGCTGGTGGTAGTGTTGGCAACACTGATTTTGCCAGTAGTGGATTTGATGGAGGTATTGGCACCAACTTTGGTGGTGAACATGATGGAAGTGGGGGGTTGGATAGCAAGGGAAGTAGCAATGTAGATGGAGATTTGGGAGGTTTTGAAGACTCTGCGGAAGGAAGGGATGACAATGATGATACCGATGATTTTGCCAAAAGGGCTTGA 1017 0.4867 MSSHGPGLSMTILGLDTLSSGFSYTHRLKQTTQVTTMAFFGRLGNLLRQSANRQISAEMRSSPSFFQAVRCMSSAPSSKLFIGGVSYSTDEESLREAFSKYGQVREVKIILDRETGRSRGFGFVTYDSVEEASSALQALDGQELHGRQVRVNFANERPRSYGGGGGYGGGGYGGGGGYGGGGYGGGGYGGGGGYGTGGNYGSGTGGNYGSSPYGSAPSSGGGYGTGGNYGGGAGNDYSSPDSFGTSSAGGSFSGGGNFGDAGGVGRHESFAGGSVGNTDFASSGFDGGIGTNFGGEHDGSGGLDSKGSSNVDGDLGGFEDSAEGRDDNDDTDDFAKRA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2081 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 150 IPR000504 GO:0003723
Lja4g2081 338 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 336 - -
Lja4g2081 338 Gene3D - 31 175 IPR012677 -
Lja4g2081 338 SMART rrm1_1 79 152 IPR000504 GO:0003723
Lja4g2081 338 MobiDBLite consensus disorder prediction 275 338 - -
Lja4g2081 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
Lja4g2081 338 SUPERFAMILY RNA-binding domain, RBD 74 187 IPR035979 GO:0003676
Lja4g2081 338 SMART rrm2_1 79 152 IPR003954 GO:0003676
Lja4g2081 338 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 37 336 - -
Lja4g2081 338 PRINTS Eggshell protein signature 162 177 - -
Lja4g2081 338 PRINTS Eggshell protein signature 74 90 - -
Lja4g2081 338 PRINTS Eggshell protein signature 189 199 - -
Lja4g2081 338 PRINTS Eggshell protein signature 219 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2081 Lja-Chr4 22391108 22395145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2081 43 158 C2H2 Transcription Factor Family AT2G19380 30.252 1.75e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2081 K12741 - gmx:100799124 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2081 4 22391108 22395145 Lja4g2081 4 22391108 22395145 ECH