Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2078 ATGGCCAAATCCATCACCCCAAACGCCGTCTCCACCTTGATCTCAAACCCCTCCCCTGACTCCTCCTCAGATCTCCCCGAACTCATTGTCCAAGTCCTCGATCTCAAACAAAGCGGCATGAACAGATACATGTTTGCTGCGAATGATGGAAAATTGAAGCTGAAGGCGATTCTTCCTTCCAGCATGTACTCTGAGGTTCTCTCTGGGAATATTCAGAACTTAGGGTTGATTCGCATCCTTGATTACACTGTCAATGATATCCCCAATAAGCCTGAGAAATACCTTATTGTGACCAAGTGTGAAGCGGTTTCTCCTGCGCTTGAAATGGAGATCAAGACTGAGCAAACCGCTGCTGGTATTGTTTTGAAGCCCAGGGAGGACGGTGGAGTCAAGAGCGAAGCTGCTGCTGGGATTGTTCTGAAGCCGAAGCAGGAAATGGTGACGAAATCGGCTGCTCAGATTGTACACGAGCAACATGGAAATGTGGCTCCTGCTGCACGAATGGCGATGACACGCAGGGTGCGTCCTCTTGTTTCTTTGAATCCTTATCAGGCTAATTGGACGATTAAGGTCAGTGTTACCAGCAAAGGGAACATGCGTACATATAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAATGTTGAGTTGACAGATGAAGAAGGTACTCAAATTCAAGCAACAATGTTCAATGATGCTGCGAGGAAATTTTATGACAAATTTGTTTTGGGAAAGGTTTACTACATTTCTAAGGGAACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTTCAAAATGATTATGAAATGACTCTGAATGAGAACTCTGAGGTAGAAGAGGTGGCCAATGAAGCGGTTTTTGTTCCTGAAACTAAATTCAACTTTGTCCAGATTGATCAGCTGGGTCCTTTTGTCAATAAGAATGAACTTGTTGATGTTGTTGGAGTTGTTCAGAATGTGTCTGCATCAACAAGCATTCGTCGGAAGATCAATAATGAGACTATTCCTAAGCGTGATATCACTATTGCTGATGAAACGAAGAAGACAGTAGTTGTGTCTTTGTGGAATGATCTTGCAACTAACATAGGACAAGAGTTGCTGGACATGGCTGATAAATCTCCGGTAGTTGCAATCAAAGCCCTCAGGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAACTATAAGCAAAAGTCTGGTTCTGATAAATCCAGACATACCTGAAGCAAAGAGACTAAAATGCTGGTATGATGCTGAAGGTAAGGATGCTCCACTGGCTTCTGTTGGCTCTGGTTCAAGTGCAACATCCCCCAATGGAGCTAGATCGGTGTATGCTGATCGGGTTCCACTCTCTCACATAACCACTAACACATCCCTGGGGCAGGACAAGCCTGTGTTTTTCAGTGTTAGAGGGCATATAAGTTTCATAAAGCCAGATCAGACAATGTCGTATCGGGCCTGCAAGACTTGCAATAAGAAAGTTACTGAAAGCTTTGGTGCTGGGTACTGGTGTGAAGCTTGCCAGAAAAATGATGAACAATGCAGTTTAAGGTATATCATGGTTGTAAAAGTTTCTGATGCAAGTGGTGAGGCTTATATCTCAGTCTTTAATGATGAAGCTGAGAAGATTGTTGGGTGCTCTGCTGATGAGCTAGACAACCTTAAGCAACAGGAGGGAGAAGACAATCCTTATCAGTTGAAATTGAAACAAGCTACCTGGGTTCCACACCTATTCCGAGTCAGTGTTTCTCAGAATGAGTATAACAACGAGAAGAGGCAAAGGATAACAGCACGGGCTGTTGTTCCTGTTGACTTTGCTGCGGAGTCAAGACTCCTCTTGGAAGAGATATCAAAAATGAAAGCTGCACAATAA 1866 0.4368 MAKSITPNAVSTLISNPSPDSSSDLPELIVQVLDLKQSGMNRYMFAANDGKLKLKAILPSSMYSEVLSGNIQNLGLIRILDYTVNDIPNKPEKYLIVTKCEAVSPALEMEIKTEQTAAGIVLKPREDGGVKSEAAAGIVLKPKQEMVTKSAAQIVHEQHGNVAPAARMAMTRRVRPLVSLNPYQANWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVANEAVFVPETKFNFVQIDQLGPFVNKNELVDVVGVVQNVSASTSIRRKINNETIPKRDITIADETKKTVVVSLWNDLATNIGQELLDMADKSPVVAIKALRVGDFQGVSLSTISKSLVLINPDIPEAKRLKCWYDAEGKDAPLASVGSGSSATSPNGARSVYADRVPLSHITTNTSLGQDKPVFFSVRGHISFIKPDQTMSYRACKTCNKKVTESFGAGYWCEACQKNDEQCSLRYIMVVKVSDASGEAYISVFNDEAEKIVGCSADELDNLKQQEGEDNPYQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESRLLLEEISKMKAAQ* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2078 621 Pfam OB-fold nucleic acid binding domain 187 273 IPR004365 GO:0003676
Lja4g2078 621 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lja4g2078 621 CDD RPA1_DBD_A 176 279 - -
Lja4g2078 621 PANTHER REPLICATION FACTOR A 1, RFA1 5 615 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja4g2078 621 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 616 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja4g2078 621 SUPERFAMILY Nucleic acid-binding proteins 292 420 IPR012340 -
Lja4g2078 621 Gene3D - 173 282 IPR012340 -
Lja4g2078 621 CDD RPA1_DBD_C 451 616 IPR013955 -
Lja4g2078 621 SUPERFAMILY Nucleic acid-binding proteins 175 282 IPR012340 -
Lja4g2078 621 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 615 - -
Lja4g2078 621 Gene3D - 287 426 IPR012340 -
Lja4g2078 621 Gene3D - 427 617 IPR012340 -
Lja4g2078 621 CDD RPA1_DBD_B 320 415 - -
Lja4g2078 621 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Lja4g2078 621 Pfam Replication protein A OB domain 304 401 IPR031657 -
Lja4g2078 621 Gene3D - 4 115 IPR012340 -
Lja4g2078 621 Pfam Replication factor-A C terminal domain 464 610 IPR013955 -
Lja4g2078 621 Coils Coil 535 555 - -
Lja4g2078 621 SUPERFAMILY Nucleic acid-binding proteins 442 617 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2078 Lja-Chr4 22373093 22376371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2078 1 621 Core DNA Replication Machinery Family AT5G08020 68.971 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2078 K07466 - gmx:100777091 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2078 4 22373093 22376371 Lja4g2078 4 22373093 22376371 ECH