Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2072 ATGACTGAAAATTCAAGCAAAGGCTATGATCAAATGAAGCAAGAGGGTACTAATGAGGTTAAAACTGAGAGATTGATCTCCTCCAATAAGGCACTCTCTACCTCAAGACAATGGACAGCATTCAGGAACCCAAGAATTGTGAGAGTGTCACGGGCCTTGGGAGGAAAAGACAGGCACAGCAAGGTTTGCACCGTTAGAGGACTCCGCGACCGTCGGATCAGGCTTTCTGTGCCCACAGCAATTGAGTTATATGATCTTCAGGACAGGCTTGGGCTCAGCCAACCCAGCAAGGTTGTAGATTGGTTGCTTGAAGCCTCCAAAACTGACATTGATAAGCTTCCACCACTTCAAATCCCTAACTGCAGCTTTTCTCAATTTCATCATCAAGATCAATATTCAGGTAATGATAGGCTTTCTCTTGGAGTTGGAGGCTTGTTCTATGATGGTACTAGTGCTTCCAGTCAAAGCCTCATGGCAAAGTCAAGGTATAATTGGGATGTTGATTTAGTGTCAAGGCTAAAGGGTAAGGAAGATGAAAGTGAGAAAGGTAAGTGCTTGATGAAAGAAACTCAAGACTCAGCTCAGAAGCTCTTTCCTATTGGGATTAATTATAACTCTTCTTCTTCTTTACCTGGTTTTCTAAACAATGCCATGACATATAATATTAACTCCTTCCAATCAGAGCCTTCTTCAAGTCTATCTTTATCACAATTTGGAAGCCATGGAGTGTTGTTTCCTTACCTGCAGCCAGATTCTAATTCCATGTTGCAATATCCAAGCAACAACAATGGCAGTGTTGTGCCCTTCTCATCCTCTTTGTCTGCTTCACAGTTACTTTTCTGTCCTTCTTCTTCTGCTACTACACCAACATCACTTTTTGGCAATCCGCATGCTCCACTTATGACAAACTCATCAGCGGAAAGTAGTGATCCAAGACAATACAATTCCAACCATGTGCACACCTTGAGCTCAGGTTCCTCACTCATGCCTCATCCTTTCATGCCATCTCTTCATCCATTCAGCAATTCACCTTTGAGTCGACGCCTTCCAACGCCATTTAGTTCCAAGCTTCTTGATTCAGATAATAACTAA 1092 0.4267 MTENSSKGYDQMKQEGTNEVKTERLISSNKALSTSRQWTAFRNPRIVRVSRALGGKDRHSKVCTVRGLRDRRIRLSVPTAIELYDLQDRLGLSQPSKVVDWLLEASKTDIDKLPPLQIPNCSFSQFHHQDQYSGNDRLSLGVGGLFYDGTSASSQSLMAKSRYNWDVDLVSRLKGKEDESEKGKCLMKETQDSAQKLFPIGINYNSSSSLPGFLNNAMTYNINSFQSEPSSSLSLSQFGSHGVLFPYLQPDSNSMLQYPSNNNGSVVPFSSSLSASQLLFCPSSSATTPTSLFGNPHAPLMTNSSAESSDPRQYNSNHVHTLSSGSSLMPHPFMPSLHPFSNSPLSRRLPTPFSSKLLDSDNN* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2072 363 Pfam TCP family transcription factor 55 155 IPR017887 -
Lja4g2072 363 MobiDBLite consensus disorder prediction 344 363 - -
Lja4g2072 363 MobiDBLite consensus disorder prediction 292 325 - -
Lja4g2072 363 MobiDBLite consensus disorder prediction 1 23 - -
Lja4g2072 363 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 363 IPR005333 GO:0003700
Lja4g2072 363 ProSiteProfiles TCP domain profile. 55 113 IPR017887 -
Lja4g2072 363 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2072 Lja-Chr4 22325750 22327675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2072 38 127 TCP Transcription Factor Family AT5G60970 83.516 1.02e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja4g2072 TCP 4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2072 - - gmx:102670246 296.204