Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g2069 | ATGAACGGGCACAGAAGCGAGAGAACCCCTCTCTTGGAAGCTGAGCGCGGTGCCGGAAGGGGAAAGAGAAATGAGGATGCTTCTGAAGGTCCAGTCTCAGACCTTGAACACGGTGATGCCGTACCGGCGGCAAATGTGGGGTTCGGTAGAGTGCTTTCACTTGCAAAGCCTGAGGCTGGAAAGTTGGTGGTTGCTACGGTGGCTCTGTTGATTGCAGCCACTTCGAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATGAGGACCACAGAGCTGAAGCAAGAAGCATTAAATGCTGTCAAGAGCACCATCCTAGAAATCTTTCTGATTGTTGTTTTTGGTTCAATTTGCACAGCACTTCGAGCTTGGCTCTTTAGTTCTGCTAGTGAAAGGGTTGTTGCACGACTCAGAAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGATGTCACTCGAACCGGGGAACTTTTAAGTAGGTTATCAGAAGATACACAGATCATAAAGAATGCTGCAACAACCAATCTTTCTGAGGCTTTGAGAAACTTGTCAACTGCATTTATTGGGCTCAGTTTCATGCTTACAACATCATGGAAGTTGACATTGTTGGCTTTGGCTGTTGTACCTCTTATTTCTGTTGCTGTTCGACAATTTGGCCGTTTTCTGCGTGAACTTTCGCATAAAACACAAGCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCCTTTGGCGCAATTAGAACAGTTAGATCTTTTGCTCAGGAAGATTATGAAATAACACGCTACTCTGAGAAAGTTGATGAGACACTTAAGCTTGGACTTAAACAAGCTAAAGTTGTGGGACTCTTTTCTGGAGGCCTTAATGCGGCATCTACACTATCAGTTATTGTAGTTGTTATATATGGAGCAAATTTAACAATCAAGGGTGCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCGGTTGGATCCTCTATATCTGGTCTTTCCGGATTGTATACAGTAGTTATGAAAGCCGCAGGTGCGAGCAGAAGGGTATTTCAAATTATGGATCGTGTCTCATCCATGTCTAAGTCAGGAACTAAATGTCCTCTGGGTGATCAAGATGGGGAAGTGGAACTGGATGATGTATGGTTTTCCTACCCATCTCGCCCAAGTCATCCAGTGCTCAAGGGCATTACAATGAAACTGCACCCTGGCTCAAAGGTTGCTCTTGTTGGTCCTAGTGGTGGTGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTCTGGCAGAAATATCACACAGGCATTTACACAGAAAGATCAGTATCGTGAGCCAAGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAACTCAACTCTGTTGATATAGAAAATGCAGCTAAAATGGCCAATGCGCACGAGTTCATATCAAAATTTCCGGAAAAATACCAGACTTTTGTTGGAGAGCGTGGGGTAAGGCTTTCTGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTCCTTATGGACCCCAAAATTCTCCTCCTGGACGAAGCCACCAGTGCCTTGGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGATTCTATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACCGCTAATACTGTCGTGGTTATTTCTGATGGCCAAGTAGCTGAGAAGGGCACACATGATGAGCTTCTCAGCCAGAATGGTGTCTATTCTGCATTGGTCAAGAGACAACTCCAAACAACAAAAGATGAAAATCAAGTCATCTAG | 1911 | 0.4396 | MNGHRSERTPLLEAERGAGRGKRNEDASEGPVSDLEHGDAVPAANVGFGRVLSLAKPEAGKLVVATVALLIAATSSILVQKFGGKIIDIVSGDMRTTELKQEALNAVKSTILEIFLIVVFGSICTALRAWLFSSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMLTTSWKLTLLALAVVPLISVAVRQFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEITRYSEKVDETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQIMDRVSSMSKSGTKCPLGDQDGEVELDDVWFSYPSRPSHPVLKGITMKLHPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLAEISHRHLHRKISIVSQEPTLFNCSIEENIAYGFDGKLNSVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVVVISDGQVAEKGTHDELLSQNGVYSALVKRQLQTTKDENQVI* | 637 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g2069 | 636 | Pfam | ABC transporter transmembrane region | 63 | 335 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lja4g2069 | 636 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 2 | 629 | IPR039421 | - | |
Lja4g2069 | 636 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 380 | 625 | IPR027417 | - | |
Lja4g2069 | 636 | Gene3D | ABC transporter type 1, transmembrane domain | 39 | 368 | IPR036640 | GO:0005524|GO:0016021 | |
Lja4g2069 | 636 | Gene3D | - | 381 | 635 | IPR027417 | - | |
Lja4g2069 | 636 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 63 | 353 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lja4g2069 | 636 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Lja4g2069 | 636 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Lja4g2069 | 636 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 387 | 624 | IPR003439 | GO:0005524 | |
Lja4g2069 | 636 | SUPERFAMILY | ABC transporter transmembrane region | 50 | 366 | IPR036640 | GO:0005524|GO:0016021 | |
Lja4g2069 | 636 | ProSitePatterns | ABC transporters family signature. | 527 | 541 | IPR017871 | GO:0005524 | |
Lja4g2069 | 636 | PANTHER | ABC TRANSPORTER B FAMILY MEMBER 25 | 2 | 629 | - | - | |
Lja4g2069 | 636 | PIRSF | ABC_prm/ATPase_B | 11 | 636 | - | - | |
Lja4g2069 | 636 | CDD | ABC_MTABC3_MDL1_MDL2 | 387 | 625 | - | - | |
Lja4g2069 | 636 | CDD | ABC_6TM_AtABCB27_like | 65 | 361 | - | - | |
Lja4g2069 | 636 | Pfam | ABC transporter | 405 | 555 | IPR003439 | GO:0005524 | |
Lja4g2069 | 636 | SMART | AAA_5 | 414 | 607 | IPR003593 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g2069 | Lja-Chr4 | 22285840 | 22291760 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g2069 | 115 | 625 | Calmodulin-binding Proteins | AT2G36910 | 40.462 | 3.05e-105 | 344 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja4g2069 | - | - | gmx:100810510 | 1074.69 |