Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2069 ATGAACGGGCACAGAAGCGAGAGAACCCCTCTCTTGGAAGCTGAGCGCGGTGCCGGAAGGGGAAAGAGAAATGAGGATGCTTCTGAAGGTCCAGTCTCAGACCTTGAACACGGTGATGCCGTACCGGCGGCAAATGTGGGGTTCGGTAGAGTGCTTTCACTTGCAAAGCCTGAGGCTGGAAAGTTGGTGGTTGCTACGGTGGCTCTGTTGATTGCAGCCACTTCGAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATGAGGACCACAGAGCTGAAGCAAGAAGCATTAAATGCTGTCAAGAGCACCATCCTAGAAATCTTTCTGATTGTTGTTTTTGGTTCAATTTGCACAGCACTTCGAGCTTGGCTCTTTAGTTCTGCTAGTGAAAGGGTTGTTGCACGACTCAGAAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGATGTCACTCGAACCGGGGAACTTTTAAGTAGGTTATCAGAAGATACACAGATCATAAAGAATGCTGCAACAACCAATCTTTCTGAGGCTTTGAGAAACTTGTCAACTGCATTTATTGGGCTCAGTTTCATGCTTACAACATCATGGAAGTTGACATTGTTGGCTTTGGCTGTTGTACCTCTTATTTCTGTTGCTGTTCGACAATTTGGCCGTTTTCTGCGTGAACTTTCGCATAAAACACAAGCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCCTTTGGCGCAATTAGAACAGTTAGATCTTTTGCTCAGGAAGATTATGAAATAACACGCTACTCTGAGAAAGTTGATGAGACACTTAAGCTTGGACTTAAACAAGCTAAAGTTGTGGGACTCTTTTCTGGAGGCCTTAATGCGGCATCTACACTATCAGTTATTGTAGTTGTTATATATGGAGCAAATTTAACAATCAAGGGTGCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCGGTTGGATCCTCTATATCTGGTCTTTCCGGATTGTATACAGTAGTTATGAAAGCCGCAGGTGCGAGCAGAAGGGTATTTCAAATTATGGATCGTGTCTCATCCATGTCTAAGTCAGGAACTAAATGTCCTCTGGGTGATCAAGATGGGGAAGTGGAACTGGATGATGTATGGTTTTCCTACCCATCTCGCCCAAGTCATCCAGTGCTCAAGGGCATTACAATGAAACTGCACCCTGGCTCAAAGGTTGCTCTTGTTGGTCCTAGTGGTGGTGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTCTGGCAGAAATATCACACAGGCATTTACACAGAAAGATCAGTATCGTGAGCCAAGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAACTCAACTCTGTTGATATAGAAAATGCAGCTAAAATGGCCAATGCGCACGAGTTCATATCAAAATTTCCGGAAAAATACCAGACTTTTGTTGGAGAGCGTGGGGTAAGGCTTTCTGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTCCTTATGGACCCCAAAATTCTCCTCCTGGACGAAGCCACCAGTGCCTTGGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGATTCTATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACCGCTAATACTGTCGTGGTTATTTCTGATGGCCAAGTAGCTGAGAAGGGCACACATGATGAGCTTCTCAGCCAGAATGGTGTCTATTCTGCATTGGTCAAGAGACAACTCCAAACAACAAAAGATGAAAATCAAGTCATCTAG 1911 0.4396 MNGHRSERTPLLEAERGAGRGKRNEDASEGPVSDLEHGDAVPAANVGFGRVLSLAKPEAGKLVVATVALLIAATSSILVQKFGGKIIDIVSGDMRTTELKQEALNAVKSTILEIFLIVVFGSICTALRAWLFSSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMLTTSWKLTLLALAVVPLISVAVRQFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEITRYSEKVDETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQIMDRVSSMSKSGTKCPLGDQDGEVELDDVWFSYPSRPSHPVLKGITMKLHPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLAEISHRHLHRKISIVSQEPTLFNCSIEENIAYGFDGKLNSVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVVVISDGQVAEKGTHDELLSQNGVYSALVKRQLQTTKDENQVI* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2069 636 Pfam ABC transporter transmembrane region 63 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g2069 636 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 629 IPR039421 -
Lja4g2069 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 625 IPR027417 -
Lja4g2069 636 Gene3D ABC transporter type 1, transmembrane domain 39 368 IPR036640 GO:0005524|GO:0016021
Lja4g2069 636 Gene3D - 381 635 IPR027417 -
Lja4g2069 636 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja4g2069 636 MobiDBLite consensus disorder prediction 1 38 - -
Lja4g2069 636 MobiDBLite consensus disorder prediction 1 33 - -
Lja4g2069 636 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 624 IPR003439 GO:0005524
Lja4g2069 636 SUPERFAMILY ABC transporter transmembrane region 50 366 IPR036640 GO:0005524|GO:0016021
Lja4g2069 636 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524
Lja4g2069 636 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 2 629 - -
Lja4g2069 636 PIRSF ABC_prm/ATPase_B 11 636 - -
Lja4g2069 636 CDD ABC_MTABC3_MDL1_MDL2 387 625 - -
Lja4g2069 636 CDD ABC_6TM_AtABCB27_like 65 361 - -
Lja4g2069 636 Pfam ABC transporter 405 555 IPR003439 GO:0005524
Lja4g2069 636 SMART AAA_5 414 607 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2069 Lja-Chr4 22285840 22291760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2069 115 625 Calmodulin-binding Proteins AT2G36910 40.462 3.05e-105 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2069 - - gmx:100810510 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2069 4 22285840 22291760 Lja4g2069 4 22285840 22291760 ECH