Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2066 ATGGAATCTTGGAGCTTTGTCTCTGAGGATCAAAAGGGGTATTCACTTTCACCTCCCAACACTCTTGGTAGAAGTAAAAATTCATTCTTAGGCTGGGAATTGAACACCCCTTGTAGTTTTTCCACCGACATCAACATGAGTCAGCAAAACGTTGATAATCAACCAACTGAGGAATTGGGTTTTCCTGATATGTTGGGTGGGAAACAGCAATTTTCTGATCATGATCTGGTTTGCAGTGTTCTCAACAGAGGTGAATCAAATTCCTCCAAGCTTACTTCAAACTCTGTGGCGGTTTCTAACGGTCGGGATTCCTTCATTGATTTGAAGCTGGGGCGTTTTGCTGATCATGGAGATTCACATGCCTTTGATTCAGGATTTTCCAGAAGAGTTCCTATTTTGTCTTCTTCTGAGTCATCAACACCACCCAAGAGAGTGAGAGCTTCAGGGATGCACTCTCAGACTGCATATTGTCAAGTCTATGGCTGTAACAAGGATCTAAGCTCATGTAAAGACTATCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCCACAGTTATTGTGAATGGAACTGAGCAGAGATTTTGTCAGCAATGCAGTAGGTTTCATTTGCTCACTGAATTTGATGATGGTAAGCGCAGCTGCCGTAAACGCCTTGCAGGCCATAATGAGCGGCGAAGAAAACCACAATTGGGTATTCACTCCGGAAAGTCCGGGAGGTTGCTTCAGCCATGTGGTGATAGCAGATTCCAGGGAACAAAGCTCACACCAGCATCTTTTATCGTCCCAGAGATGCTCCCTAGTGGGATCATGCATCCTGAGAGATATGAAATAGGTGGCTTCTGGAGACCTATAATAAAAGCAGAATGTGGGGGTGGCTTTAAACATCTTTCTTCTATGTCTATTACCAATGGACATCCTATGTCAAGATCTCTATTTCCTTCACACAACCAAAAACAATTTCCCTTTCTTCATCATGAAAATGGTGCCGCGTCCACTACCGAAAGCATCTTCTGTGATAGCAATGGCCAATATCCACCTTCCCTCGGGGCTGCCCAAAATTCTGGTTTACGACCACTATTCCACGACACCTCCTTAGGAAGTGAGGACTTCAATGTTTTCTACACACCATCAACTGTTCAGGGATTATCGGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCACAATCCCAGAACTCGCCAAGCCAATCGTCAGGAATTCCTTTGGCTCACCCCTTTGTTATTCCCAGCAGCCATAGCCATCACTACAGCATGAGTCAGGTCTCGGAAAAGATAGGAATAAGCTCACACACTTCTTCAAGCCGTGTGTCGGATGGGTTTCCATCAGAACTAAATCATGCAGATGGAGGTAATCTCGGTCCTGCATTGATATCAGACAATCATGATATTGTCCACTTTGGAATGGCAGATGGGATTTTCCAACAATCAGATTTTGTGAGCGTGAAAGATCGTCTTTCCTGTGAAGATGATGCGACCATTGACTTGCTCCAACTGTCATCACAGCTTCAGCGAGTGGAGCATCAGCGGCAATCCTTGCAGCTAAAGCAAGAGAATGATTCTCCGTGCACTCTCCGGATTACTTAA 1617 0.4471 MESWSFVSEDQKGYSLSPPNTLGRSKNSFLGWELNTPCSFSTDINMSQQNVDNQPTEELGFPDMLGGKQQFSDHDLVCSVLNRGESNSSKLTSNSVAVSNGRDSFIDLKLGRFADHGDSHAFDSGFSRRVPILSSSESSTPPKRVRASGMHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGTEQRFCQQCSRFHLLTEFDDGKRSCRKRLAGHNERRRKPQLGIHSGKSGRLLQPCGDSRFQGTKLTPASFIVPEMLPSGIMHPERYEIGGFWRPIIKAECGGGFKHLSSMSITNGHPMSRSLFPSHNQKQFPFLHHENGAASTTESIFCDSNGQYPPSLGAAQNSGLRPLFHDTSLGSEDFNVFYTPSTVQGLSGISDSCALSLLSSQSQNSPSQSSGIPLAHPFVIPSSHSHHYSMSQVSEKIGISSHTSSSRVSDGFPSELNHADGGNLGPALISDNHDIVHFGMADGIFQQSDFVSVKDRLSCEDDATIDLLQLSSQLQRVEHQRQSLQLKQENDSPCTLRIT* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2066 538 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g2066 538 Gene3D - 147 218 IPR036893 GO:0003677|GO:0005634
Lja4g2066 538 Coils Coil 506 526 - -
Lja4g2066 538 PANTHER 1 PROTEIN, PUTATIVE-RELATED 25 538 - -
Lja4g2066 538 SUPERFAMILY SBT domain 155 235 IPR036893 GO:0003677|GO:0005634
Lja4g2066 538 Pfam SBP domain 157 230 IPR004333 GO:0003677
Lja4g2066 538 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 538 IPR044817 GO:0003677
Lja4g2066 538 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
Lja4g2066 538 MobiDBLite consensus disorder prediction 223 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2066 Lja-Chr4 22224241 22228590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2066 1 274 SBP-box Gene Family AT1G69170 41.727 4.72e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja4g2066 SBP 6.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2066 - - gmx:100817547 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2066 4 22224241 22228590 Lja4g2066 4 22224241 22228590 ECH