Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2064 ATGGGCCGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATCAACAGACAGGTAACATTTTCAAAGAGAAGGTCTGGTTTGCTGAAGAAAGCCAACGAGATCTCAGTGCTTTGCGATGCTGAAGTGGCTCTCATCGTTTTCTCCACTAAAGGAAAGCTTTACGAGTACTCCAGCGACCCCTGTATGGAAAGAATTCTTGAACGGTATGAGAGATATTCATATGCAGATAAGAGGCAGGCTGATGCAAATGATCAGGCTCCAAGTGAAAATTGGGTTCTTGAACATGCAAAGCTTAAGGCTAGGATGGAAGTCTTACAGAGAAATCAAAGGAATTTCATGGGAGAAGAGCTGGATAGCTTAAGTCTCAAGCAGCTTCAGAATTTGGAACAGCAACTTGATTCCGCTCTCAAACACATTAGATCACGAAAGAACCAAGCCTTGTTTGAATCTATTTCAGAGCTTCAAAAAAAGGATAAGGCACTTCAGGAACAAAACAACTTGCTGACCAAGAAGATAAAGGAAAAAGAGAAGGCCATCACCACCCAAGAGGAGCAAGAGGGGCTTCAAAATAGTGCAAATGTTGCCTCTGGCCTAGTAACTCAACCATTGGAGTCCATGAACATTGGAGGCTCCCCAGAAGCCAGATGTGATGAAAGAACTCCAACTCCTACTCCTACTCCAACTCGAGCTAACACCATTAATCTTCCCCCTTGGATGCTTCGTCCTACAAATGATCAATAG 744 0.4395 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLYEYSSDPCMERILERYERYSYADKRQADANDQAPSENWVLEHAKLKARMEVLQRNQRNFMGEELDSLSLKQLQNLEQQLDSALKHIRSRKNQALFESISELQKKDKALQEQNNLLTKKIKEKEKAITTQEEQEGLQNSANVASGLVTQPLESMNIGGSPEARCDERTPTPTPTPTRANTINLPPWMLRPTNDQ* 248
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2064 247 Coils Coil 89 109 - -
Lja4g2064 247 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lja4g2064 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g2064 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja4g2064 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g2064 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lja4g2064 247 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g2064 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g2064 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja4g2064 247 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 213 - -
Lja4g2064 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g2064 247 MobiDBLite consensus disorder prediction 205 247 - -
Lja4g2064 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja4g2064 247 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Lja4g2064 247 MobiDBLite consensus disorder prediction 222 247 - -
Lja4g2064 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Lja4g2064 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja4g2064 247 Coils Coil 123 186 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja4g2064 Lja-Chr4 22153053 22168942 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2064 1 186 MADS-box Gene Family AT1G26310 65.241 1.74e-86 256
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g2064 K-box 1.8e-28 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2064 K09264 K09260 gmx:100805348 337.421
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5449 1 92545461 92556064 Lja4g2064 4 22153053 22168942 ECH
Lja1g2729 1 32540999 32548040 Lja4g2064 4 22153053 22168942 ECH
Lja2g1508 2 14624737 14643619 Lja4g2064 4 22153053 22168942 ECH
Lja4g2064 4 22153053 22168942 Lja4g2064 4 22153053 22168942 ECH