Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2056 ATGGAGCTTTCTCAAGCGCGTGCGTATGGAACCGAAGGAAACAAAGCCACGCATGACTTTCTGTCGCTGTGCAGTAATTCAAGTGGGCAACAAGATCCAATACCAGCATCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGATGCCAAGGAAGAAGCCACAGATGAGATATCATCGGCGGCGGTGGTTCAAAATGCACCACCTTTAGCAACACCAGGTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGAACTTACAGTATTAGCCACATTTCCTACTTAAATAATAGTCAAAGAATTCCAAAGCCAGAGGCATCCAATTTCACTGTGCGTCAAGCAGCTACTACTGACTTAAATGATGACAATTCGAACAGCAGTTCATATACTTCAAGCGGTTTCACTTTGTGGGAAGAGTCTGCGATTAAAAAGGGAAAGACAGGAAAGGAGAATAACAAGGGCGAGAAACCCAGTGTAGGAGAGTCTGCGGCAATGCCAGGGCAGTGGACGTTGACCGAGCGAACGCCACAGTTGTTTTCCAACAATCGTCACGGCAGCTTCAACTCTCGCTCTTCATCCCAGACAACTGGACAGAAGAACCAGAGTTTCATTGAAATGATGAAGTCTGCAAATTGTGCTGAGGATGAAGAGCTAGAGAATGAAGAGCCTTTTTTTCTGAAGAAAGAATCCCCGAATACCCCAAGAGAAGAGCTGAGGGTGAAAGTGGATGCGAAGACCAATGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGGAGAAGCAAAATTAATGACAGATTCCAGATGCTACGACAGCTTATTCCACACAGTGACCAAAAGAGGGATAAAGCATCTTTCTTGTTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCCTTCCAAGGGTGGAATAACGAGCCAGAGAAATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAAGTTTTCAACCTCGTGGCACAAATAGTGGGTCAAGTTCATCTCCAACATTGCTGTTTCCTTCGAAGGCTGACGAGAAAAATATCAACATTTCCCCAACAATTCCTGGGAGTACCCAGAATCTAGAATCTGGCTTGAACACAGGCACAGCAACTACCTTGAAGAAAATGGATCATCAGTCTGGAACTCTGAACAAGGCTTTTTCAGCTCCTTTTTCTCCGCCGCCAAATTTCTTCCCTCCAACCCAAATCAGCGGTCCAGGTGGAGTAGTATCTCAACTCACACATAGGTTGGCATCTGATGCAGAGAACACCGTACATATACCTTCAGTGGAATCTCAAACAATAAATGCTACCAGTGAAAAGCTGAAAGAGAAAGGGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACACTTACACAAGCCTTGCAGAGTTCGGGTGTGGATTTGTCACAAGCTAGCATTTCAGTGCAAATTGAACTTGGAAAGCAAACAAGCACCAGGCCAACTGTACCAAAGTCAATGTTTGGTGCTAAGGATGAGGAAGTTCCTTCTAACAATCAAAGGATGATTCGCTCAAGAGTTGCTAGCTCTGACAAGTCTGATCAACCAGTAAAGAAGCTAAAGTCGTGCAGAAGTTAA 1689 0.4435 MELSQARAYGTEGNKATHDFLSLCSNSSGQQDPIPASQGSYLKTHDFLQPLERDAKEEATDEISSAAVVQNAPPLATPGSVEHLLPGGIGTYSISHISYLNNSQRIPKPEASNFTVRQAATTDLNDDNSNSSSYTSSGFTLWEESAIKKGKTGKENNKGEKPSVGESAAMPGQWTLTERTPQLFSNNRHGSFNSRSSSQTTGQKNQSFIEMMKSANCAEDEELENEEPFFLKKESPNTPREELRVKVDAKTNDQKPNTPRSKHSATEQRRRSKINDRFQMLRQLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWRNNDKPAESFQPRGTNSGSSSSPTLLFPSKADEKNINISPTIPGSTQNLESGLNTGTATTLKKMDHQSGTLNKAFSAPFSPPPNFFPPTQISGPGGVVSQLTHRLASDAENTVHIPSVESQTINATSEKLKEKGLTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQASISVQIELGKQTSTRPTVPKSMFGAKDEEVPSNNQRMIRSRVASSDKSDQPVKKLKSCRS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2056 562 MobiDBLite consensus disorder prediction 147 204 - -
Lja4g2056 562 MobiDBLite consensus disorder prediction 340 360 - -
Lja4g2056 562 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 329 IPR036638 GO:0046983
Lja4g2056 562 Pfam Helix-loop-helix DNA-binding domain 260 309 IPR011598 GO:0046983
Lja4g2056 562 MobiDBLite consensus disorder prediction 226 274 - -
Lja4g2056 562 SMART finulus 264 314 IPR011598 GO:0046983
Lja4g2056 562 MobiDBLite consensus disorder prediction 331 360 - -
Lja4g2056 562 MobiDBLite consensus disorder prediction 515 562 - -
Lja4g2056 562 MobiDBLite consensus disorder prediction 544 562 - -
Lja4g2056 562 CDD bHLH_AtBIM_like 257 333 - -
Lja4g2056 562 Gene3D - 256 329 IPR036638 GO:0046983
Lja4g2056 562 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 559 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lja4g2056 562 PANTHER TRANSCRIPTION FACTOR BIM1 1 559 - -
Lja4g2056 562 MobiDBLite consensus disorder prediction 147 161 - -
Lja4g2056 562 MobiDBLite consensus disorder prediction 219 274 - -
Lja4g2056 562 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Lja4g2056 562 MobiDBLite consensus disorder prediction 173 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2056 Lja-Chr4 22030997 22044646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2056 1 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.237 4.80e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g2056 HLH 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2056 - - gmx:100808016 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2056 4 22030997 22044646 Lja4g2056 4 22030997 22044646 ECH