Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2055 ATGTCGTGCCTGTCCCCTGCTTCCTCGAAGAAGCGTCTCAAATCCCAAGAGGAAGACGATGATGACGAAGACGATGATAGCTGCGGGATTTGCTTCGCCGAACGTGGGGCTTTTGTCGCCGGCGAAATTGATTGCTGCAGCCACTACTTCTGCTTCGTCTGCATCATGGAGTGGGCCAAGCACGAGTCTCGATGCCCACTTTGTCGCCAGAGATTCTCCAACATTCGCCGGCCTCCTATGCTTGGCCTCTTCCCTTCCTCCAGAGACGTTAATGTCCCTTGTCGTGATCAGGCTACCCATTCTTATGGAAATATTACAACTGGTCCTGTTGGTTCCAATGGTGAAGCCAAATGCAGTGTTTGTCTTATTGAGTCTCATGAGAATCTTCTGCTAGTTTGTGATCTTTGTAGCACTGTTTCACATTCATTCTGCACTGGCTTGGGTTTTACTGTTCCTGAAGGTGATTGGTTTTGTCCTGATTGTGCTACTGCCCGGGAGAGTGTGACCAGTACCAATGAAGAATCAGAGCAACAAAATGTGTCGAGTGTGACCATTTCTGATATTGTGAGAGGTCCAGGCAGGAGCAACCAGGTGGATGGAAGATCAGTGACATCTTCTTCACAGCAAAACCAGTCATCTGCTCCTGTTATTTCTTTGCCTGATAGGGTTAGTGGATTCAATGCCAACATTCCTGTGTCTCGTGTTGAACTTGCTAAGCATAGAGTGCAGGCAATCCGTGCTAATTGGAATGCTTTGAGGACTGGTTCATTGCGGTTCAGCAATTCAGCTCAATCTGGTGGCACAGCTAGTGAAAAACAAGAATCTGGTTCCTTATCAGGTGGGAAATTAAATGTTTCACCTTCGATGGCTTCCGGTTCCGGTGGCCTACAACAATCTGCAGTCCAAGGTGGTTCTTCTAGTAATGGGTTGAATGATAGAGGCATGAATGATGTTGAGAAGGCTTGGAAAATGATGGACAGGGCAAAGATGAAAAAACAGACTCATCAAAGAACTAGCAGCATTCCACAGAGAGCGGGTAATCCCTCAAGGAGTGGAGCTAGAGAAATGTCATTATCTCATTTTGATTGCCCAGCATCGGAAAATCAACAGCTCAGAAAGTTAGACTCAAGGCACACTAGAATGGACAAGAAGCGTGAGTATTCGAGTCTCAACAAGAATTTGGGAAATCACAAGTATCCCATGTCGGGAGAGAAAAGGCAAAGTAGGGTCGAGACGATGCAACATGTGAAGGACCGTACTAATTCAGAAGGATACGGTGGGCGTCCATTGCCCAAAATGGTTTGTGCTGGTATGCAGGGTGTTCCCTGTCATGATTATGAAGAGAGGAATGGTGCTAATGAGCCAAGGCGGTTTGGTTGCTTGGTAACTTCAGAAGGTTCAGCTCCATCTCATTGCAAACCAGGCAGTGTGATCTCTAATAAAGATGCGGATATTTTCCATGAAGAGAAGAGGTTGACTAAAACCTTTGGAGAGGGCAACACAAGAAATTTTGAAGAAGCAAAAGATGAAATCAAGTCTCTTGTTAAAACGAATCTGAAGTTCTTAACTAAAGATAAAAAACTAGGTGTTGAAACCTTTAAGATAGTTGCAAGGCAGGCTACACATAGCATATTGGCTGCTTGCAGTTCCAAGCAGCAGAACTCTAATATGTACTCCTCAAGCTCAATGTGCAGCCATCATGACCATAATCAGCAGTTGAAAAAATCTACTTTAATGCCTAATTGTTGTAGTCAATGCTTTGATGTCTTTGTGAACAATACTGTCAATTCCATCTTGTTGGACAAAGTGGGTCGTGCTTGA 1821 0.4487 MSCLSPASSKKRLKSQEEDDDDEDDDSCGICFAERGAFVAGEIDCCSHYFCFVCIMEWAKHESRCPLCRQRFSNIRRPPMLGLFPSSRDVNVPCRDQATHSYGNITTGPVGSNGEAKCSVCLIESHENLLLVCDLCSTVSHSFCTGLGFTVPEGDWFCPDCATARESVTSTNEESEQQNVSSVTISDIVRGPGRSNQVDGRSVTSSSQQNQSSAPVISLPDRVSGFNANIPVSRVELAKHRVQAIRANWNALRTGSLRFSNSAQSGGTASEKQESGSLSGGKLNVSPSMASGSGGLQQSAVQGGSSSNGLNDRGMNDVEKAWKMMDRAKMKKQTHQRTSSIPQRAGNPSRSGAREMSLSHFDCPASENQQLRKLDSRHTRMDKKREYSSLNKNLGNHKYPMSGEKRQSRVETMQHVKDRTNSEGYGGRPLPKMVCAGMQGVPCHDYEERNGANEPRRFGCLVTSEGSAPSHCKPGSVISNKDADIFHEEKRLTKTFGEGNTRNFEEAKDEIKSLVKTNLKFLTKDKKLGVETFKIVARQATHSILAACSSKQQNSNMYSSSSMCSHHDHNQQLKKSTLMPNCCSQCFDVFVNNTVNSILLDKVGRA* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2055 606 MobiDBLite consensus disorder prediction 169 220 - -
Lja4g2055 606 MobiDBLite consensus disorder prediction 1 25 - -
Lja4g2055 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 187 IPR013083 -
Lja4g2055 606 ProSiteProfiles Zinc finger PHD-type profile. 115 164 IPR019787 -
Lja4g2055 606 Pfam PHD-finger 118 162 IPR019787 -
Lja4g2055 606 SMART PHD_3 117 162 IPR001965 -
Lja4g2055 606 MobiDBLite consensus disorder prediction 169 218 - -
Lja4g2055 606 MobiDBLite consensus disorder prediction 335 354 - -
Lja4g2055 606 MobiDBLite consensus disorder prediction 260 314 - -
Lja4g2055 606 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 10 603 - -
Lja4g2055 606 PANTHER F18C1.6 PROTEIN 10 603 - -
Lja4g2055 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 77 IPR013083 -
Lja4g2055 606 ProSiteProfiles Zinc finger RING-type profile. 28 69 IPR001841 -
Lja4g2055 606 SMART ring_2 28 68 IPR001841 -
Lja4g2055 606 SMART ring_2 118 161 IPR001841 -
Lja4g2055 606 MobiDBLite consensus disorder prediction 328 357 - -
Lja4g2055 606 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Lja4g2055 606 Pfam Ring finger domain 26 69 IPR001841 -
Lja4g2055 606 SUPERFAMILY RING/U-box 18 75 - -
Lja4g2055 606 MobiDBLite consensus disorder prediction 260 313 - -
Lja4g2055 606 SUPERFAMILY FYVE/PHD zinc finger 109 165 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2055 Lja-Chr4 22000907 22004044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2055 109 165 C2H2 Transcription Factor Family AT3G01460 31.034 1.42e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja4g2055 PHD 2.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2055 - - ccaj:109808332 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2055 4 22000907 22004044 Lja4g2055 4 22000907 22004044 ECH