Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2054 ATGGCTGATGTGACGTACCTCCACCGCACCCACCACCACGAACCCGACGACGACCAAACCCTAATCCCCTTACCTTTCTGGTCACCATCCGATTTCGATTTCTACTCCTCCGATCCCGAATTCCCCCACCACCACCACAACCACCACTTATCCCACCGTGAAAACCAGGTCAATTTCGTCATGGACCTCTTCCACCAGCGCGTTGAGCAATCCTCCCACCACCTCACCGACGATGATCCCCTTCCTCAATCCCTCACCGACTCCGTCTTCGACGGACTCGGCCTCGATTTAGGGTTCGCCCCTGACGACGACACCGACGATTTCTTCCCCGCTGCCGGATCCGGAACCCTCGACGACCTCGCCGCGCAAATCGCCGGGTTCGTGTCTGATTCCGACGACGAGGACCCCGACGGGGTACTCGGGATCTGTGTTCACTCCGACGCGGAGGAGCGGAACGAAAACGACGACGTTTCGGGGATTCCTCTGTGTTGGGACTCGCTGCAGTTGGAGGAGAATATCAGAGACAGCACCAGCTATGAGGATTTCGAGTGGGAGGAGGTTGACGGCCGCGTCGACGAGAGGGAGGTTCTGAGTATGTTCGCCGTCGTCGACGATGACAGGTCGGTTTCCGTTTCGATTTCTCCGATTGAAGAAGAAGAACAAGAAGAAGAAGATGATGATCAATTGGAACTCAACATGAGGGTAGGTTCCGGCGTGGAGAATTTGGAGTGGCAAGTGTTGTTGAACGCCGACAATTTGGAGGGGACGAGCCCTGAAGCGGAGCCATATTTTGAGGACAACGACGATTACATCTACACTGCGGAGTACGAGATGATGTTCGGGCAATTCGCGGAGAACGAAAACCCGTTGGCGGGTAGGCCTCCGGCGTCTGCCTCCGTCGTTGAGAGCCTTCCGGCGGTGACGGTGAAGGAAGACGACGTGGGCAACAACAATGCGCTATGTGCTGTTTGTAAGGATGATTTTGTTGTTGGGGAAGAGGTGAAGCAGTTGCCATGCTCGCATCGTTACCATGGTGATTGCATTGTGCCTTGGTTGGGGATTAGGAATACATGCCCTGTTTGTCGCTATGAGTTTCCTACTGATGATGCTGATTATGAGCGTAGGAGGGTTCAGAGATCTGCACAGAGCCTGTGA 1155 0.5498 MADVTYLHRTHHHEPDDDQTLIPLPFWSPSDFDFYSSDPEFPHHHHNHHLSHRENQVNFVMDLFHQRVEQSSHHLTDDDPLPQSLTDSVFDGLGLDLGFAPDDDTDDFFPAAGSGTLDDLAAQIAGFVSDSDDEDPDGVLGICVHSDAEERNENDDVSGIPLCWDSLQLEENIRDSTSYEDFEWEEVDGRVDEREVLSMFAVVDDDRSVSVSISPIEEEEQEEEDDDQLELNMRVGSGVENLEWQVLLNADNLEGTSPEAEPYFEDNDDYIYTAEYEMMFGQFAENENPLAGRPPASASVVESLPAVTVKEDDVGNNNALCAVCKDDFVVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRRVQRSAQSL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2054 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 368 IPR013083 -
Lja4g2054 384 SUPERFAMILY RING/U-box 300 368 - -
Lja4g2054 384 SMART ring_2 321 361 IPR001841 -
Lja4g2054 384 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
Lja4g2054 384 CDD RING-H2_RNF126_like 321 362 - -
Lja4g2054 384 PANTHER - 248 380 - -
Lja4g2054 384 PANTHER - 52 86 - -
Lja4g2054 384 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 248 380 - -
Lja4g2054 384 Pfam Ring finger domain 321 362 IPR001841 -
Lja4g2054 384 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 52 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2054 Lja-Chr4 21975690 21977405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2054 160 368 C3H Transcription Factor Family AT5G60820 47.534 2.26e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2054 - - cam:101503991 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2054 4 21975690 21977405 Lja4g2054 4 21975690 21977405 ECH