Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2051 ATGGGATGCTCATTCTCCGGCCTGAACGCATTGTACGACTCGGTGAACGGCGGTGGTGACGTTTGGATCAACGAGAATCGATTCCGCATCGTCAGGCAGCTCGGTGAAGGTGGCTTCGCCTACGTCTTCCTCGTCAAGGAGGTGCCTAACGACTCTGCTGCCGGTGGCCTTGCTAATAAGCTCAAACACTCTTCTCACATCTCCGATGACGGGAGTTATGCTATGAAGAAGGTCCTGATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGCGTTTCGTCATTGTTCAATCATCCCAATCTGCTCCCGCTTCTTGATCATGCTATCATTGCTGTGAAGCAGCGTACCCAGGAAACATCATGGACCCATGAAGCTTACTTGTTATTTCCGGTTCATTTGGACGGAACATTGCTAGACAATGCCCAAACAATGAAAGCCAAGAAGGAATTCTATTCTACCTCTGATGTTCTTCAAATATTTCAGCAGCTTTGTGAAGGACTAAAGCATATGCACAGTTTGGAACCTCCATATGCACATAACGATGTTAAACCTGGTAATGTTCTCATAACACATAGAAAAGGACAACCGCCTCTTGCCATACTGATGGATTTTGGCAGTTCTCGTCCTGCTAGGAAGCAAATTAGTTCCAGATCAGAGGCGCTTCAGTTGCAGGAATGGGCATCTGAACATTGCTCAGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGCCCAAGTCATGCTGATATAGATGAGAGGACTGATGTTTGGTCACTAGGATGCACATTATATGCGATAATGTATGGTGTATCTCCATTTGAGTATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAATGCTCAGATCAAATGGCCAGCTGGACCTAAGCCTTCATATCCAGAAGCTCTTCGTCAGTTTGTGTCATGGATGCTTCAGCCCCAAGCTTTTATGCGGCCCAGGATAGATGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTTGCTAATTGA 1032 0.4641 MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGFAYVFLVKEVPNDSAAGGLANKLKHSSHISDDGSYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIIAVKQRTQETSWTHEAYLLFPVHLDGTLLDNAQTMKAKKEFYSTSDVLQIFQQLCEGLKHMHSLEPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSSRPARKQISSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPKPSYPEALRQFVSWMLQPQAFMRPRIDDIIIHVDKLIAKFAN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2051 343 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 342 - -
Lja4g2051 343 CDD STKc_16 27 339 - -
Lja4g2051 343 Pfam Protein kinase domain 65 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2051 343 SMART serkin_6 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2051 343 PANTHER - 1 342 - -
Lja4g2051 343 Gene3D Transferase(Phosphotransferase) domain 1 16 342 - -
Lja4g2051 343 SUPERFAMILY Protein kinase-like (PK-like) 20 333 IPR011009 -
Lja4g2051 343 ProSiteProfiles Protein kinase domain profile. 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2051 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2051 Lja-Chr4 21914240 21919677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2051 33 333 EF-hand Containing Proteins AT4G04710 24.516 2.10e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lja4g2051 Pkinase 2.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2051 K08856 - gmx:100803659 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2051 4 21914240 21919677 Lja4g2051 4 21914240 21919677 ECH